Factsheet for PGSC0003DMT400006326

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30730_001	Banana	cytosol	75.52	22.78
PGSC0003DMT400058594	Potato	cytosol	79.02	22.74
VIT_01s0011g06600.t01	Wine grape	cytosol	77.62	22.42
VIT_04s0079g00600.t01	Wine grape	cytosol	74.83	21.93
PGSC0003DMT400034693	Potato	cytosol	75.52	21.51
GSMUA_Achr4P31270_001	Banana	cytosol	70.63	20.65
PGSC0003DMT400079706	Potato	cytosol	65.73	18.73
PGSC0003DMT400003251	Potato	cytosol	7.69	7.19
PGSC0003DMT400051021	Potato	plastid	15.38	4.03

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	MapMan:35.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	UniProt:M0ZR52
PFAM:PF00282	EnsemblPlantsGene:PGSC0003DMG400002473	PGSC:PGSC0003DMG400002473	EnsemblPlants:PGSC0003DMT400006326	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	UniParc:UPI000295209C	:	:

Description

Glutamate decarboxylase 4a [Source:PGSC_GENE;Acc:PGSC0003DMG400002473]

Coordinates

chr00:-:39305299..39306182

Molecular Weight (calculated)

16385.8 Da

IEP (calculated)

4.445

GRAVY (calculated)

-0.043

Length

143 amino acids

Sequence
(BLAST)

001: MVLSKTSSES DVYVHSTFAS RYVRASLPRF EMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMSSI NKNYVDMDEY PVTTELQVIS
101: SSLLYDGFRI LNLLGIKLYN ETSVMDCLYT LKLLNSVKFQ LTV

Best Arabidopsis Sequence Match ( AT2G02010.1 )
(BLAST)

001: MVLSKTVSES DVSIHSTFAS RYVRNSLPRF EMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMESI NKNYVDMDEY PVTTELQNRC
101: VNMIARLFNA PLGDGEAAVG VGTVGSSEAI MLAGLAFKRQ WQNKRKAQGL PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VNLREDYYVM DPVKAVEMVD
201: ENTICVAAIL GSTLTGEFED VKLLNDLLVE KNKQTGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RTKTDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY RNVMDNCREN MMVLRQGLEK TGRFKIVSKE NGVPLVAFSL KDSSRHNEFE VAHTLRRFGW
401: IVPAYTMPAD AQHVTVLRVV IREDFSRTLA ERLVADFEKV LHELDTLPAR VHAKMANGKV NGVKKTPEET QREVTAYWKK LLETKKTNKN TIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.