Factsheet for VIT_04s0079g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30730_001	Banana	cytosol	86.07	88.61
VIT_01s0011g06600.t01	Wine grape	cytosol	89.75	88.48
EER95206	Sorghum	cytosol	87.3	86.94
Zm00001d047981_P001	Maize	cytosol	86.68	86.33
CDY16935	Canola	cytosol	86.68	85.98
Solyc05g054050.2.1	Tomato	plastid	87.5	85.92
GSMUA_Achr4P31270_001	Banana	cytosol	86.07	85.89
Os03t0720300-01	Rice	plastid	86.07	85.37
Os03t0236200-01	Rice	plasma membrane	86.07	85.37
Bra008561.1-P	Field mustard	cytosol	82.38	85.35
EER93555	Sorghum	cytosol	86.07	85.19
TraesCS4A01G369200.1	Wheat	cytosol	79.1	85.02
CDY15807	Canola	cytosol	85.86	84.99
Bra006397.1-P	Field mustard	cytosol	87.3	84.86
Bra026621.1-P	Field mustard	cytosol	85.66	84.79
Solyc04g025530.2.1	Tomato	plastid	85.45	84.58
Bra017429.1-P	Field mustard	cytosol	85.45	84.58
CDY04111	Canola	cytosol	85.45	84.58
CDY09396	Canola	cytosol	85.45	84.58
Solyc11g011920.1.1	Tomato	plastid	87.09	84.49
CDX78740	Canola	cytosol	69.88	84.41
Zm00001d033805_P001	Maize	cytosol, extracellular	85.04	84.18
KRH17286	Soybean	cytosol	86.68	84.1
AT5G17330.1	Thale cress	cytosol	86.48	84.06
CDY68511	Canola	cytosol, mitochondrion	69.47	83.7
KRH72934	Soybean	cytosol	86.27	83.7
TraesCS4A01G262600.1	Wheat	cytosol	84.84	83.64
TraesCS4B01G052300.1	Wheat	cytosol	84.84	83.64
TraesCS4D01G052500.1	Wheat	plastid	84.84	83.64
CDY56295	Canola	cytosol	84.43	83.4
HORVU4Hr1G064790.6	Barley	cytosol	84.84	83.3
KRG97998	Soybean	endoplasmic reticulum	85.66	83.1
HORVU4Hr1G008700.1	Barley	cytosol	84.22	83.03
Solyc01g005000.2.1	Tomato	cytosol	82.17	82.85
Bra006396.1-P	Field mustard	cytosol, plastid	84.02	82.66
CDX78739	Canola	cytosol, plastid	84.02	82.66
TraesCS4B01G231400.1	Wheat	cytosol	84.43	82.4
KRH30893	Soybean	endoplasmic reticulum	68.85	82.35
Bra004137.1-P	Field mustard	cytosol	65.98	82.14
CDY07474	Canola	cytosol	82.99	81.98
TraesCS4A01G075600.1	Wheat	cytosol	83.81	81.8
CDY39258	Canola	cytosol	82.79	81.78
CDY02710	Canola	cytosol	82.17	81.5
AT1G65960.2	Thale cress	cytosol	82.38	81.38
AT2G02000.1	Thale cress	cytosol	82.99	81.0
Bra023612.1-P	Field mustard	cytosol	77.87	80.51
CDY28614	Canola	cytosol	64.34	80.1
CDY12173	Canola	cytosol	56.76	80.06
Bra021090.1-P	Field mustard	cytosol	80.94	79.96
CDX85460	Canola	cytosol	76.43	79.7
TraesCS4D01G232700.1	Wheat	cytosol	85.04	78.6
VIT_17s0000g00920.t01	Wine grape	cytosol	78.89	76.24
AT2G02010.2	Thale cress	plastid	85.04	76.15
PGSC0003DMT400006326	Potato	cytosol	21.93	74.83
KRH42467	Soybean	nucleus	74.59	73.83
KRH42468	Soybean	cytosol	74.59	73.83
KRH58569	Soybean	cytosol	74.39	73.63
KRH42466	Soybean	cytosol	68.44	70.91
CDY71197	Canola	cytosol	14.75	69.23
VIT_01s0011g06610.t01	Wine grape	cytosol	72.13	68.88
CDX70751	Canola	cytosol, plastid	85.45	64.95
CDY12174	Canola	cytosol	15.98	64.46
CDX70758	Canola	cytosol	15.16	62.71
CDX87975	Canola	cytosol	12.7	60.78
Bra006404.1-P	Field mustard	cytosol	17.21	54.9
CDX78746	Canola	cytosol	17.21	54.9
CDX78742	Canola	cytosol	10.66	54.74
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.66	54.74
HORVU7Hr1G081730.1	Barley	peroxisome	17.01	40.49
Os05t0421750-00	Rice	mitochondrion	19.88	37.16
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	21.11	19.18

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100256481	wikigene:100256481
Gene3D:3.40.640.10	Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	ProteinID:CBI27356	ProteinID:CBI27356.3	UniProt:D7TA34
EMBL:FN595753	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	EntrezGene:LOC100256481	wikigene:LOC100256481	PFAM:PF00282
PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TIGR:TC61482	TIGR:TC61791	TIGR:TC66142	TIGRFAMs:TIGR01788	UniParc:UPI0001985F32	ArrayExpress:VIT_04s0079g00600
EnsemblPlantsGene:VIT_04s0079g00600	EnsemblPlants:VIT_04s0079g00600.t01	unigene:Vvi.6995	RefSeq:XP_002270937	RefSeq:XP_002270937.1	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:D7TA34]

Coordinates

chr4:+:11271833..11278144

Molecular Weight (calculated)

55233.1 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.308

Length

488 amino acids

Sequence
(BLAST)

001: MALSETASES NASIHSTFAS RYVRVSLPRF KIPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMASI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGESEAAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PHDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLTDGYYVM DPVKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKHLNDLLTK KNKETGWDTP IHVDAASGGF IAPFLHPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RSKEDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNIMENCQEN ARVLKEGLEK TGHFNIVSKE NGVPLVAFSL KDNSCHNEFE VSDMLRRYGW
401: IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVTDIQKV LYELDTLPAK ITAKVQQSNK KSEIETQREI TEAWKKFVRE KKKTNGVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.