Factsheet for Zm00001d047981_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95206	Sorghum	cytosol	97.14	97.14
Os03t0236200-01	Rice	plasma membrane	95.31	94.92
TraesCS4A01G369200.1	Wheat	cytosol	82.65	89.21
HORVU4Hr1G064790.6	Barley	cytosol	90.41	89.13
GSMUA_Achr8P30730_001	Banana	cytosol	85.92	88.82
TraesCS4B01G231400.1	Wheat	cytosol	90.41	88.6
TraesCS4A01G075600.1	Wheat	cytosol	90.41	88.6
VIT_04s0079g00600.t01	Wine grape	cytosol	86.33	86.68
Zm00001d033805_P001	Maize	cytosol, extracellular	86.73	86.21
VIT_01s0011g06600.t01	Wine grape	cytosol	86.94	86.06
GSMUA_Achr4P31270_001	Banana	cytosol	85.1	85.28
TraesCS4D01G232700.1	Wheat	cytosol	90.82	84.28
AT5G17330.1	Thale cress	cytosol	85.1	83.07
PGSC0003DMT400034693	Potato	cytosol	84.9	82.87
KRH72934	Soybean	cytosol	84.9	82.7
Solyc11g011920.1.1	Tomato	plastid	84.9	82.7
KRG97998	Soybean	endoplasmic reticulum	84.49	82.31
Solyc05g054050.2.1	Tomato	plastid	83.47	82.29
KRH17286	Soybean	cytosol	84.29	82.11
KRH30893	Soybean	endoplasmic reticulum	67.35	80.88
AT1G65960.2	Thale cress	cytosol	80.2	79.55
AT2G02000.1	Thale cress	cytosol	80.41	78.8
Zm00001d003531_P002	Maize	plastid	77.14	77.3
AT2G02010.2	Thale cress	plastid	82.86	74.5
Zm00001d003522_P002	Maize	cytosol	67.76	65.35
CDX70758	Canola	cytosol	15.31	63.56
Zm00001d031749_P005	Maize	cytosol	64.08	60.04
CDX78746	Canola	cytosol	17.96	57.52
Bra006404.1-P	Field mustard	cytosol	17.96	57.52
CDX78742	Canola	cytosol	10.2	52.63
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.2	52.63
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	19.8	17.6

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100381655	Gene3D:3.40.640.10
Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	ProteinID:AQL08210.1	EMBL:BT061891	UniProt:C0HHT5	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase
InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major
InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI000160B76F	EnsemblPlantsGene:Zm00001d047981	EnsemblPlants:Zm00001d047981_P001
EnsemblPlants:Zm00001d047981_T001	SEG:seg	:	:	:	:

Description

Glutamate decarboxylase 1

Coordinates

chr9:-:147117784..147120247

Molecular Weight (calculated)

55836.2 Da

IEP (calculated)

5.915

GRAVY (calculated)

-0.264

Length

490 amino acids

Sequence
(BLAST)

001: MVLSKAVSES DMSVHSTFAS RYVRSSLPRY RMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMAAI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGESETAVG VGTVGSSEAI MLAGLAFKRR WQNKRRAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELRE VKLRDGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLQA KNRETRWETP IHVDAASGGF IAPFLYPDLE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRHGFEGY RNIMENCHEN AMVLKEGLEK TGRFDIVSKD EGVPLVAFSL KDRSRHDEFE ISDMLRRFGW
401: IVPAYTMPPD AQHVTVLRVV IREEFSRTLA ERLVLDIEKV MYQLDALPSR LPPPPPAAPL LRKKTELETQ RSVTEAWKKF VLAKKTNGVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.