Factsheet for Bra006404.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78746	Canola	cytosol	100.0	100.0
Bra006399.1-P	Field mustard	cytosol, mitochondrion	48.37	77.89
Bra008561.1-P	Field mustard	cytosol	77.12	25.05
Os05t0421750-00	Rice	mitochondrion	41.83	24.52
Bra006397.1-P	Field mustard	cytosol	78.43	23.9
Bra023612.1-P	Field mustard	cytosol	72.55	23.52
Bra006396.1-P	Field mustard	cytosol, plastid	69.93	21.57
Bra004137.1-P	Field mustard	cytosol	54.9	21.43
Os03t0236200-01	Rice	plasma membrane	58.82	18.29
Zm00001d047981_P001	Maize	cytosol	57.52	17.96
EER95206	Sorghum	cytosol	57.52	17.96
Solyc05g054050.2.1	Tomato	plastid	56.86	17.5
Bra026621.1-P	Field mustard	cytosol	56.21	17.44
Bra021090.1-P	Field mustard	cytosol	56.21	17.41
TraesCS4B01G231400.1	Wheat	cytosol	56.86	17.4
Os03t0720300-01	Rice	plastid	55.56	17.28
Zm00001d033805_P001	Maize	cytosol, extracellular	55.56	17.24
EER93555	Sorghum	cytosol	55.56	17.24
VIT_04s0079g00600.t01	Wine grape	cytosol	54.9	17.21
TraesCS4A01G075600.1	Wheat	cytosol	56.21	17.2
TraesCS4D01G052500.1	Wheat	plastid	55.56	17.17
TraesCS4B01G052300.1	Wheat	cytosol	55.56	17.17
TraesCS4A01G262600.1	Wheat	cytosol	55.56	17.17
HORVU4Hr1G064790.6	Barley	cytosol	55.56	17.1
Solyc11g011920.1.1	Tomato	plastid	56.21	17.1
Bra017429.1-P	Field mustard	cytosol	54.9	17.04
HORVU4Hr1G008700.1	Barley	cytosol	54.9	16.97
VIT_01s0011g06600.t01	Wine grape	cytosol	54.9	16.97
PGSC0003DMT400034693	Potato	cytosol	55.56	16.93
GSMUA_Achr4P31270_001	Banana	cytosol	52.94	16.56
TraesCS4A01G369200.1	Wheat	cytosol	49.02	16.52
TraesCS4D01G232700.1	Wheat	cytosol	56.86	16.48
GSMUA_Achr8P30730_001	Banana	cytosol	49.67	16.03
Bra022241.1-P	Field mustard	cytosol	45.1	14.08
Bra021272.1-P	Field mustard	cytosol	44.44	13.82
Bra010909.1-P	Field mustard	plastid	12.42	3.49
Bra032860.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.90.1150.160	MapMan:35.1
EnsemblPlantsGene:Bra006404	EnsemblPlants:Bra006404.1	EnsemblPlants:Bra006404.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351
GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030170
InterPro:Glutamate_decarboxylase	UniProt:M4CQB5	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	SUPFAM:SSF53383
UniParc:UPI000253FD81	:	:	:	:	:

Description

AT5G17330 (E=4e-061) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase

Coordinates

chrA03:+:3369407..3370766

Molecular Weight (calculated)

17495.2 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.214

Length

153 amino acids

Sequence
(BLAST)

001: MIMLRNGLEK TERFNIVSKD EGVPLVAFSL KDSSSHTEFE ISDMLHRYGW IVPAYTMPPN AQHITVLLVV IREDFSRTLA ERLVIDIEKV MRVLDELPSR
101: VIHKILLGEE NSEADGDNLM VTVKKSDMES RERSSIYGRS LFQTGRRLMV SGN

Best Arabidopsis Sequence Match ( AT1G65960.1 )
(BLAST)

001: MLAGLAFKRK WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VNLSEGYYVM DPDKAAEMVD ENTICVAAIL GSTLNGEFED VKRLNDLLVK
101: KNEETGWNTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RAAEDLPEEL IFHINYLGAD QPTFTLNFSK GSSQIIAQYY
201: QLIRLGFEGY KNVMENCIEN MVVLKEGIEK TERFNIVSKD QGVPVVAFSL KDHSFHNEFE ISEMLRRFGW IVPAYTMPAD AQHITVLRVV IREDFSRTLA
301: ERLVADISKV LHELDTLPSK ISKKMGIEGI AENVKEKKME KEILMEVIVG WRKFVKERKK MNGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.