Factsheet for Bra006399.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78742	Canola	cytosol	98.95	98.95
Bra006404.1-P	Field mustard	cytosol	77.89	48.37
Bra008561.1-P	Field mustard	cytosol	89.47	18.05
Bra006397.1-P	Field mustard	cytosol	90.53	17.13
Bra023612.1-P	Field mustard	cytosol	84.21	16.95
Os05t0421750-00	Rice	mitochondrion	42.11	15.33
Bra006396.1-P	Field mustard	cytosol, plastid	72.63	13.91
Bra004137.1-P	Field mustard	cytosol	54.74	13.27
Solyc05g054050.2.1	Tomato	plastid	57.89	11.07
Bra021090.1-P	Field mustard	cytosol	56.84	10.93
Os03t0720300-01	Rice	plastid	55.79	10.77
EER93555	Sorghum	cytosol	55.79	10.75
VIT_04s0079g00600.t01	Wine grape	cytosol	54.74	10.66
Zm00001d033805_P001	Maize	cytosol, extracellular	54.74	10.55
Solyc11g011920.1.1	Tomato	plastid	55.79	10.54
VIT_01s0011g06600.t01	Wine grape	cytosol	54.74	10.51
TraesCS4D01G052500.1	Wheat	plastid	54.74	10.51
TraesCS4B01G052300.1	Wheat	cytosol	54.74	10.51
TraesCS4A01G262600.1	Wheat	cytosol	54.74	10.51
Os03t0236200-01	Rice	plasma membrane	53.68	10.37
PGSC0003DMT400034693	Potato	cytosol	54.74	10.36
Bra026621.1-P	Field mustard	cytosol	53.68	10.34
HORVU4Hr1G008700.1	Barley	cytosol	53.68	10.3
Zm00001d047981_P001	Maize	cytosol	52.63	10.2
Bra017429.1-P	Field mustard	cytosol	52.63	10.14
EER95206	Sorghum	cytosol	51.58	10.0
TraesCS4A01G075600.1	Wheat	cytosol	48.42	9.2
TraesCS4B01G231400.1	Wheat	cytosol	48.42	9.2
HORVU4Hr1G064790.6	Barley	cytosol	47.37	9.05
GSMUA_Achr4P31270_001	Banana	cytosol	46.32	9.0
TraesCS4D01G232700.1	Wheat	cytosol	48.42	8.71
GSMUA_Achr8P30730_001	Banana	cytosol	43.16	8.65
Bra022241.1-P	Field mustard	cytosol	40.0	7.76
TraesCS4A01G369200.1	Wheat	cytosol	35.79	7.49
Bra021272.1-P	Field mustard	cytosol	37.89	7.32
Bra010909.1-P	Field mustard	plastid	5.26	0.92
Bra032860.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra006399.1	EnsemblPlants:Bra006399.1-P	EnsemblPlantsGene:Bra006399	Gene3D:3.90.1150.160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030170	InterPro:Glutamate_decarboxylase	KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15
PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	UniParc:UPI000253FD7C	UniProt:M4CQB0	MapMan:35.1	:

Description

AT5G17330 (E=9e-041) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase

Coordinates

chrA03:+:3354834..3355121

Molecular Weight (calculated)

11072.5 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.625

Length

95 amino acids

Sequence
(BLAST)

1: MPPNAQHITV LRVVIREDFS RTLAERLVID IEKVMRELDE LPSRVIHKIL LGEEKSEADG DNLMVTGKKS DMEKQREIIN GWKRFSDRKK RNGIC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.