Factsheet for Os03t0720300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 24083427
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93555	Sorghum	cytosol	96.75	96.55
Zm00001d033805_P001	Maize	cytosol, extracellular	95.73	95.54
TraesCS4B01G052300.1	Wheat	cytosol	89.02	88.48
TraesCS4D01G052500.1	Wheat	plastid	88.82	88.28
TraesCS4A01G262600.1	Wheat	cytosol	88.82	88.28
GSMUA_Achr8P30730_001	Banana	cytosol	84.96	88.19
HORVU4Hr1G008700.1	Barley	cytosol	88.41	87.88
Os03t0236200-01	Rice	plasma membrane	86.18	86.18
GSMUA_Achr4P31270_001	Banana	cytosol	85.57	86.09
VIT_04s0079g00600.t01	Wine grape	cytosol	85.37	86.07
VIT_01s0011g06600.t01	Wine grape	cytosol	84.76	84.24
AT5G17330.1	Thale cress	cytosol	84.76	83.07
Solyc11g011920.1.1	Tomato	plastid	84.76	82.9
Solyc05g054050.2.1	Tomato	plastid	83.74	82.9
PGSC0003DMT400034693	Potato	cytosol	84.55	82.87
KRH17286	Soybean	cytosol	84.55	82.7
KRH72934	Soybean	cytosol	84.35	82.5
KRG97998	Soybean	endoplasmic reticulum	84.35	82.5
KRH30893	Soybean	endoplasmic reticulum	67.68	81.62
AT1G65960.2	Thale cress	cytosol	80.28	79.96
Os04t0447400-01	Rice	plasma membrane	78.46	79.75
AT2G02000.1	Thale cress	cytosol	80.28	79.0
Os08t0465800-01	Rice	cytosol, extracellular, plasma membrane, plastid	78.66	77.87
AT2G02010.2	Thale cress	plastid	83.13	75.05
Os04t0447800-01	Rice	cytosol, plasma membrane	71.34	70.2
CDX70758	Canola	cytosol	14.84	61.86
CDX78742	Canola	cytosol	10.77	55.79
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.77	55.79
CDX78746	Canola	cytosol	17.28	55.56
Bra006404.1-P	Field mustard	cytosol	17.28	55.56
Os05t0421750-00	Rice	mitochondrion	20.12	37.93
Os01t0100900-01	Rice	nucleus	19.92	18.18

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:4333932	ProteinID:AAT77842.1	ProteinID:ABF98584.1	ProteinID:BAF13013.1	ProteinID:BAS86118.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	EnsemblPlantsGene:Os03g0720300	EnsemblPlants:Os03t0720300-01	PFAM:PF00282	PANTHER:PTHR43321
PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	UniProt:Q6ASV4	SUPFAM:SSF53383
TIGRFAMs:TIGR01788	UniParc:UPI00003FE724	RefSeq:XP_015631723.1	SEG:seg	:	:

Description

Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15). (Os03t0720300-01);Similar to Glutamate decarboxylase. (Os03t0720300-02)

Coordinates

chr3:+:29200210..29208630

Molecular Weight (calculated)

55069.0 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.173

Length

492 amino acids

Sequence
(BLAST)

001: MVLSHGVSGS DESVHSTFAS RYVRTSLPRF RMPEQSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIQASV NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGDSETAVG VGTVGSSEAI MLAGLAFKRR WQNKMKAAGK PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSDGYYVM DPAKAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLTK KNAETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY KNIMENCQEN AMVLKQGLEK TGRFNIVSKD NGVPLVAFSL KDSARHNEFE ISDFLRRFGW
401: IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVLDVEKV LHELDALPAR VVANGGDAAA ASASEREMEK QREVISLWKR AVLAKKKTNG VC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.