CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30893	Soybean	endoplasmic reticulum	78.93	97.3
KRH17286	Soybean	cytosol	90.26	90.26
KRH72934	Soybean	cytosol	89.66	89.66
GSMUA_Achr8P30730_001	Banana	cytosol	83.9	89.03
VIT_01s0011g06600.t01	Wine grape	cytosol	85.49	86.87
CDY16935	Canola	cytosol	83.9	85.77
VIT_04s0079g00600.t01	Wine grape	cytosol	83.1	85.66
Bra006397.1-P	Field mustard	cytosol	84.69	84.86
Zm00001d047981_P001	Maize	cytosol	82.31	84.49
EER95206	Sorghum	cytosol	82.31	84.49
Os03t0720300-01	Rice	plastid	82.5	84.35
Bra008561.1-P	Field mustard	cytosol	78.73	84.08
Os03t0236200-01	Rice	plasma membrane	82.11	83.94
TraesCS4A01G369200.1	Wheat	cytosol	75.55	83.7
AT5G17330.1	Thale cress	cytosol	83.5	83.67
GSMUA_Achr4P31270_001	Banana	cytosol	81.31	83.64
EER93555	Sorghum	cytosol	81.71	83.37
CDX78740	Canola	cytosol	66.8	83.17
Zm00001d033805_P001	Maize	cytosol, extracellular	81.11	82.76
CDY68511	Canola	cytosol, mitochondrion	66.6	82.72
TraesCS4B01G052300.1	Wheat	cytosol	81.31	82.63
TraesCS4A01G262600.1	Wheat	cytosol	81.31	82.63
TraesCS4D01G052500.1	Wheat	plastid	81.31	82.63
Bra006396.1-P	Field mustard	cytosol, plastid	81.31	82.46
CDX78739	Canola	cytosol, plastid	81.31	82.46
CDY02710	Canola	cytosol	78.93	80.69
TraesCS4B01G231400.1	Wheat	cytosol	79.52	80.0
TraesCS4A01G075600.1	Wheat	cytosol	79.13	79.6
Bra023612.1-P	Field mustard	cytosol	74.35	79.24
CDX85460	Canola	cytosol	73.56	79.06
TraesCS4D01G232700.1	Wheat	cytosol	80.12	76.33
KRH38971	Soybean	cytosol	75.55	76.31
KRH09492	Soybean	cytosol	74.95	75.55
KRH42468	Soybean	cytosol	72.56	74.04
KRH58569	Soybean	cytosol	72.56	74.04
KRH42467	Soybean	nucleus	72.17	73.63
KRH42466	Soybean	cytosol	66.6	71.13
CDX70751	Canola	cytosol, plastid	83.5	65.42
Os05t0421750-00	Rice	mitochondrion	19.28	37.16
KRH25771	Soybean	cytosol	4.17	18.1
KRH01552	Soybean	plastid, vacuole	18.69	17.57
KRH70554	Soybean	endoplasmic reticulum	18.29	17.16

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:547724	UniProt:A8C8H5	EMBL:AB240966	EMBL:ACUP02010833	EnsemblPlantsGene:GLYMA_18G043600
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	EnsemblPlants:KRG97998	ProteinID:KRG97998	ProteinID:KRG97998.1	PFAM:PF00282
PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase
SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00015D6DC5	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:3716146..3727012

Molecular Weight (calculated)

57251.7 Da

IEP (calculated)

5.573

GRAVY (calculated)

-0.233

Length

503 amino acids

Sequence
(BLAST)

001: MVLSKTASES DVSVHSTFAS RYVRTSLPRF KMAEESIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMAAI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEETEAAVG VGTVGSSEAI MLAGLAFKRK WQNRRKQEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLRDDYYVM DPEKAVELVD
201: ENTICVAAIL GSTLNGEFED VKRLNDLLIE KNKITGWDTP IHVDAASGGF IAPFIYPELE WDFRLQLVKS INVSGHKYGL VYAGIGWVIW RSKQDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY RNVMENCRDN MLVLKEGLEK TGRFSIVSKD NGVPLVAFTL KDHTHFDEFQ ISDFLRRFGW
401: IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVSDVEKV LHELDSLPAR VISSTTVTLS AEENGKVVVA KKNPMETQRE ITAIWKKFVL ERKKNNDKMN
501: GVC

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.