Factsheet for Bra008561.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68511	Canola	cytosol, mitochondrion	85.99	100.0
CDX78740	Canola	cytosol	83.65	97.52
Bra006397.1-P	Field mustard	cytosol	97.66	91.63
Bra023612.1-P	Field mustard	cytosol	91.51	91.31
Bra006399.1-P	Field mustard	cytosol, mitochondrion	18.05	89.47
AT5G17330.1	Thale cress	cytosol	95.12	89.24
Bra006396.1-P	Field mustard	cytosol, plastid	91.72	87.1
Bra004137.1-P	Field mustard	cytosol	70.49	84.69
KRH30893	Soybean	endoplasmic reticulum	72.61	83.82
VIT_04s0079g00600.t01	Wine grape	cytosol	85.35	82.38
GSMUA_Achr8P30730_001	Banana	cytosol	81.95	81.43
VIT_01s0011g06600.t01	Wine grape	cytosol	85.35	81.21
Bra026621.1-P	Field mustard	cytosol	84.29	80.53
Bra017429.1-P	Field mustard	cytosol	83.65	79.92
Bra021090.1-P	Field mustard	cytosol	83.44	79.55
KRH72934	Soybean	cytosol	84.71	79.32
GSMUA_Achr4P31270_001	Banana	cytosol	82.17	79.14
KRH17286	Soybean	cytosol	84.5	79.13
KRG97998	Soybean	endoplasmic reticulum	84.08	78.73
Bra006404.1-P	Field mustard	cytosol	25.05	77.12
Bra022241.1-P	Field mustard	cytosol	74.1	71.22
Bra021272.1-P	Field mustard	cytosol	74.31	71.14
Bra032860.1-P	Field mustard	cytosol	3.18	21.13
Bra010909.1-P	Field mustard	plastid	20.59	17.83

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EnsemblPlantsGene:Bra008561	EnsemblPlants:Bra008561.1	EnsemblPlants:Bra008561.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
UniProt:M4CWG4	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major
InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00025444CA	:	:

Description

AT5G17330 (E=3e-266) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase

Coordinates

chrA10:-:12809616..12813187

Molecular Weight (calculated)

53490.3 Da

IEP (calculated)

5.041

GRAVY (calculated)

-0.266

Length

471 amino acids

Sequence
(BLAST)

001: MPENSIPKEA AYQIINDELM LDGNPRLNLA SFVTTWMEPE CDKLIMSSIN KNSVDMDEYP VTTELQNRCV NMIAHLFNAP LGETETAVGV GTVGSSEAIM
101: LAGLAFKRKW QNKRKAEGKP FDKPNIVTGA NVQVCWEKFA RYFEVELKEV KLSEGYYVMD PEKAVEMVDE NTICVAAILG STLNGEFEDV KLLNDLLVIK
201: NKETGWDTPI HVDAASGGFI APFLYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR NKEDLPEELI FHINYLGADQ PTFTLNFSKG SSQVIAQYYQ
301: LIRLGHEGYR NVMENCRENM VVLREGLEKT GRFNIVSKDE GVPLVAFSLK DSSSHTEFEI SDMLRRYGWI VPAYTMPPNA QHITVLRVVI REDFSRTLAE
401: RLVIDIEKVM RELDELPSRI IHKISLGEEK SEVNGDNLMV TVKKSDMEKQ REVINGWKKF VSDRKKTNGI C

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.