Factsheet for Bra006396.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78739	Canola	cytosol, plastid	100.0	100.0
Bra006397.1-P	Field mustard	cytosol	93.95	92.83
Bra008561.1-P	Field mustard	cytosol	87.1	91.72
AT5G17330.1	Thale cress	cytosol	91.13	90.04
Bra023612.1-P	Field mustard	cytosol	82.86	87.08
GSMUA_Achr8P30730_001	Banana	cytosol	80.44	84.18
VIT_04s0079g00600.t01	Wine grape	cytosol	82.66	84.02
VIT_01s0011g06600.t01	Wine grape	cytosol	83.47	83.64
Bra026621.1-P	Field mustard	cytosol	83.06	83.57
Bra017429.1-P	Field mustard	cytosol	82.26	82.76
KRH72934	Soybean	cytosol	82.86	81.71
KRH17286	Soybean	cytosol	82.66	81.51
KRG97998	Soybean	endoplasmic reticulum	82.46	81.31
GSMUA_Achr4P31270_001	Banana	cytosol	79.23	80.37
Bra004137.1-P	Field mustard	cytosol	63.51	80.36
Bra021090.1-P	Field mustard	cytosol	79.64	79.96
KRH30893	Soybean	endoplasmic reticulum	65.73	79.9
Bra022241.1-P	Field mustard	cytosol	72.98	73.88
Bra021272.1-P	Field mustard	cytosol	72.38	72.97
Bra006399.1-P	Field mustard	cytosol, mitochondrion	13.91	72.63
Bra006404.1-P	Field mustard	cytosol	21.57	69.93
Bra032860.1-P	Field mustard	cytosol	3.02	21.13
Bra010909.1-P	Field mustard	plastid	19.56	17.83

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EnsemblPlantsGene:Bra006396	EnsemblPlants:Bra006396.1	EnsemblPlants:Bra006396.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
UniProt:M4CQA7	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major
InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI000253FD79	SEG:seg	:

Description

AT5G17330 (E=7e-256) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase

Coordinates

chrA03:+:3341858..3344105

Molecular Weight (calculated)

56215.6 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.200

Length

496 amino acids

Sequence
(BLAST)

001: MVLSHAASDS DVSVHSTFAS RYVRTSLPRF RMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMASI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGETETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPEQAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVL KNKETGLDIP IHVDAASGGF IAPFLYPELE WDFRLPQVKS INVSGHKYGL VYAGIGWVVW RNKEDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TGRFSIVSKD EGIPLVAFSL KDNSSHTEFE ISEMLRRYGW
401: IVPAYTMPAN AEHITVLRVV IREDFSRTLA ERLVMDIEKV MHELDELPSR VIHKISLGEV KSEDNGDNMV VTVKKSDIEK PIEIINVKKS DKPIFC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.