Factsheet for Bra010909.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90118	Canola	plastid	100.0	100.0
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	92.65	92.65
KRH01552	Soybean	plastid, vacuole	76.84	78.13
KRH70554	Soybean	endoplasmic reticulum	76.47	77.61
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	76.1	77.09
Bra032860.1-P	Field mustard	cytosol	9.93	76.06
Solyc05g015860.2.1	Tomato	plastid	72.43	73.23
Os01t0100900-01	Rice	nucleus	69.85	70.5
GSMUA_Achr6P06370_001	Banana	golgi, mitochondrion, plasma membrane, vacuole	68.93	69.96
TraesCS3D01G085400.1	Wheat	plasma membrane	69.3	69.94
PGSC0003DMT400051021	Potato	plastid	70.04	69.78
TraesCS3B01G100600.1	Wheat	golgi	69.12	69.76
EES02668	Sorghum	cytosol	68.01	69.42
KRH25771	Soybean	cytosol	14.71	68.97
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	69.12	68.24
TraesCS3A01G085400.2	Wheat	plasma membrane	69.12	67.87
HORVU3Hr1G015150.11	Barley	cytosol	66.18	66.79
Bra004137.1-P	Field mustard	cytosol	14.89	20.66
Bra008561.1-P	Field mustard	cytosol	17.83	20.59
Bra021272.1-P	Field mustard	cytosol	18.2	20.12
Bra022241.1-P	Field mustard	cytosol	17.83	19.8
Bra023612.1-P	Field mustard	cytosol	17.1	19.7
Bra006396.1-P	Field mustard	cytosol, plastid	17.83	19.56
Bra006397.1-P	Field mustard	cytosol	18.01	19.52
Bra026621.1-P	Field mustard	cytosol	17.65	19.47
Bra017429.1-P	Field mustard	cytosol	17.65	19.47
Bra021090.1-P	Field mustard	cytosol	17.1	18.83
Bra006404.1-P	Field mustard	cytosol	3.49	12.42
Bra006399.1-P	Field mustard	cytosol, mitochondrion	0.92	5.26

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:5.7.5.3	EnsemblPlantsGene:Bra010909	EnsemblPlants:Bra010909.1	EnsemblPlants:Bra010909.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4D356	PFAM:PF00282	PANTHER:PTHR42735
PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TMHMM:TMhelix	UniParc:UPI0002545880	SEG:seg	:	:	:

Description

AT1G27980 (E=4e-287) DPL1, ATDPL1 | DPL1; carboxy-lyase/ catalytic/ pyridoxal phosphate binding

Coordinates

chrA08:-:17062125..17065548

Molecular Weight (calculated)

59371.2 Da

IEP (calculated)

7.862

GRAVY (calculated)

0.014

Length

544 amino acids

Sequence
(BLAST)

001: MDSLSYSSVK SMLIQARVSL NSRLSEFEPL SLLVTPLVTL FLAQVIGSVL GVVHEKGLKA CLLGFIMGFL KMIPGVQSYI DAEKQKVVDQ LQSGGSSKKN
101: NWAKELPVKG LGVQVLEKME TEKRNDPNWQ GKCSGTVYIG GNESEGHFTL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETVSGEQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGIKRP EMIIPESGHS AYDKAAQYFN IKLWRVPVGK DFRADVKAMR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PAFDFSVQGV TSISIDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLENTGKIM EASKRLEEGV RGISELFVVG KPDMTIVAFG SKSLDIFEVN DIMSSKGWHL NALQRPNSIH ICVTLQHVPV VDDFLQDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.