Factsheet for TraesCS3B01G100600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G085400.1	Wheat	plasma membrane	98.89	98.89
TraesCS3A01G085400.2	Wheat	plasma membrane	98.14	95.49
HORVU3Hr1G015150.11	Barley	cytosol	87.76	87.76
EES02668	Sorghum	cytosol	85.71	86.68
Os01t0100900-01	Rice	nucleus	86.64	86.64
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	86.27	84.39
GSMUA_Achr6P06370_001	Banana	golgi, mitochondrion, plasma membrane, vacuole	74.58	75.0
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	74.21	74.49
KRH70554	Soybean	endoplasmic reticulum	71.61	72.01
KRH01552	Soybean	plastid, vacuole	71.43	71.96
Solyc05g015860.2.1	Tomato	plastid	70.5	70.63
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	70.5	69.85
CDY11756	Canola	plastid	70.13	69.49
CDX90118	Canola	plastid	69.76	69.12
Bra010909.1-P	Field mustard	plastid	69.76	69.12
KRH25771	Soybean	cytosol	14.66	68.1
PGSC0003DMT400051021	Potato	plastid	67.9	67.03
Bra032860.1-P	Field mustard	cytosol	8.35	63.38
CDY48414	Canola	cytosol	25.42	59.05
CDY48416	Canola	cytosol	25.42	59.05
TraesCS2B01G334000.1	Wheat	cytosol	19.11	20.64
TraesCS3B01G022900.1	Wheat	cytosol	18.18	20.0
TraesCS4B01G231400.1	Wheat	cytosol	18.55	20.0
TraesCS4B01G052300.1	Wheat	cytosol	18.18	19.8
TraesCS2B01G333700.1	Wheat	plastid	17.81	18.71
TraesCS3B01G583600.1	Wheat	cytosol, plastid	16.51	17.76

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:5.7.5.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016831
GO:GO:0019752	GO:GO:0030149	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	PFAM:PF00282
PANTHER:PTHR42735	PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase
SUPFAM:SSF53383	EnsemblPlantsGene:TraesCS3B01G100600	EnsemblPlants:TraesCS3B01G100600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:66877744..66881968

Molecular Weight (calculated)

57510.6 Da

IEP (calculated)

7.368

GRAVY (calculated)

0.047

Length

539 amino acids

Sequence
(BLAST)

001: MEAAAELAQR LRAAANDRLA GQEPLLLVAA PLLALLAARA VHAAAADVAD RGLRTVLITL AMAAVKLVPG VSGYIAAEKS KVVEQLQSGS ASSKKNLRTE
101: LPAVGDPDGV IDELQALKDK DVRWQGKCSG TVYIAGSESE GHFSLINKAY SMFSHTNPLH QDVFKSVAQL EAEVVAMTAA LLGSKEKASG GQICGNMTSG
201: GTESILLAVK TSRDYMQSKK GITKPEIIIA ESAHSAYDKA AQYFNIKVRR VPVNKEFLAD VKGFKRCING NTIMMVGSAP GFPHGLIDPI EELGELASQY
301: GICLHVDLCL GGFVLPFARK LGYPIPPFDF SVKGVTSIST DVHKYGLAPK GTSTVLYRNH EIRKHQFVAV TEWTGGLYIS PTMAGSRPGG LVAGAWAAMM
401: SLGLNGYLES TGKIMEVSRK IQKGIDDISG LFVIGKPDMT VVAFGSDAVD IFEVNDIMSS KGWHLNALQR PNSLHICVTL QHTAIYEEFL KDLEDSVNTV
501: KANPGPISGG MAPIYGAAGK MPDRGTVKEL LVEFMDSSC

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.