CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90118	Canola	plastid	98.53	98.53
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	92.65	92.65
KRH01552	Soybean	plastid, vacuole	77.21	78.5
KRH70554	Soybean	endoplasmic reticulum	77.21	78.36
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	76.47	77.47
Solyc05g015860.2.1	Tomato	plastid	72.43	73.23
Os01t0100900-01	Rice	nucleus	69.85	70.5
GSMUA_Achr6P06370_001	Banana	golgi, mitochondrion, plasma membrane, vacuole	69.3	70.34
TraesCS3D01G085400.1	Wheat	plasma membrane	69.67	70.32
EES02668	Sorghum	cytosol	68.75	70.17
TraesCS3B01G100600.1	Wheat	golgi	69.49	70.13
PGSC0003DMT400051021	Potato	plastid	70.04	69.78
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	70.04	69.15
CDY48416	Canola	cytosol	29.41	68.97
CDY48414	Canola	cytosol	29.41	68.97
KRH25771	Soybean	cytosol	14.71	68.97
TraesCS3A01G085400.2	Wheat	plasma membrane	69.49	68.23
HORVU3Hr1G015150.11	Barley	cytosol	66.18	66.79
CDX78740	Canola	cytosol	16.36	22.03
CDY68511	Canola	cytosol, mitochondrion	16.36	21.98
CDY49834	Canola	cytosol	18.38	20.7
CDY28614	Canola	cytosol	14.89	20.66
CDY46883	Canola	cytosol	18.2	20.5
CDY12173	Canola	cytosol	12.68	19.94
CDY16935	Canola	cytosol	18.01	19.92
CDX78739	Canola	cytosol, plastid	17.83	19.56
CDY09396	Canola	cytosol	17.65	19.47
CDY04111	Canola	cytosol	17.65	19.47
CDX95824	Canola	cytosol	7.9	19.46
CDY56295	Canola	cytosol	17.65	19.43
CDY02710	Canola	cytosol	17.46	19.31
CDY15807	Canola	cytosol	17.46	19.27
CDY39258	Canola	cytosol	17.1	18.83
CDY07474	Canola	cytosol	17.1	18.83
CDX85460	Canola	cytosol	15.99	18.59
CDX92158	Canola	cytosol	9.19	18.05
CDX87977	Canola	cytosol	7.17	17.11
CDX70758	Canola	cytosol	3.68	16.95
CDX87975	Canola	cytosol	3.12	16.67
CDX70751	Canola	cytosol, plastid	18.01	15.26
CDX78746	Canola	cytosol	3.49	12.42
CDY71197	Canola	cytosol	1.84	9.62
CDY12174	Canola	cytosol	2.02	9.09
CDX78742	Canola	cytosol	0.92	5.26

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:5.7.5.3	GO:A0A078FEQ7	UniProt:A0A078FEQ7	EnsemblPlants:CDY11756
ProteinID:CDY11756	ProteinID:CDY11756.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829
GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00049975001	InterPro:IPR015421	InterPro:IPR015422
PFAM:PF00282	PANTHER:PTHR42735	PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TMHMM:TMhelix	UniParc:UPI0004EB5965	SEG:seg	:

Description

BnaC03g58220DBnaC03g58220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEQ7]

Coordinates

chrLK032014:-:119354..122971

Molecular Weight (calculated)

59286.0 Da

IEP (calculated)

7.864

GRAVY (calculated)

0.017

Length

544 amino acids

Sequence
(BLAST)

001: MDSLSYSSVK SMLIQARGSL NSRLSEFEPL ALLFAPLLTL FLAQVIGSVL GVVHEKGLKA CLLGFIMGFL KMIPGVQSYI DAEKQKVVDQ LQSGGSSKKN
101: NWAKELPVKG LGVQVLEKME TEKRNDPTWQ GKCSGTVYIG GNESEGHFTL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETVSGEQICG
201: NMTSGGTESI VLAVKSSRDY MKSKKGIKRP EMIIPESGHS AYDKAAQYFN IKLWRVPVGK DFRADVKAMR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PAFDFSVQGV TSISIDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLENTSKIM EASKRLEEGV RGISELFVVG KPDMTIVAFG SKSLDIFEVN DIMSSKGWHL NALQRPNSIH ICVTLQHVPV VDDFLQDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.