CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71197	Canola	cytosol	72.73	84.62
CDX92158	Canola	cytosol	57.02	24.91
CDY07474	Canola	cytosol	72.73	17.81
CDY39258	Canola	cytosol	71.9	17.61
GSMUA_Achr8P30730_001	Banana	cytosol	63.64	16.24
VIT_04s0079g00600.t01	Wine grape	cytosol	64.46	15.98
CDY09396	Canola	cytosol	64.46	15.82
CDY15807	Canola	cytosol	64.46	15.82
CDY16935	Canola	cytosol	63.64	15.65
VIT_01s0011g06600.t01	Wine grape	cytosol	63.64	15.56
CDY04111	Canola	cytosol	62.81	15.42
CDX78739	Canola	cytosol, plastid	62.81	15.32
CDY56295	Canola	cytosol	61.98	15.18
CDY49834	Canola	cytosol	57.02	14.29
CDY46883	Canola	cytosol	57.02	14.29
GSMUA_Achr4P31270_001	Banana	cytosol	57.02	14.11
CDX85460	Canola	cytosol	52.07	13.46
CDY02710	Canola	cytosol	49.59	12.2
CDX70751	Canola	cytosol, plastid	63.64	11.99
CDX87975	Canola	cytosol	2.48	2.94
CDX78742	Canola	cytosol	1.65	2.11
CDY11756	Canola	plastid	9.09	2.02
CDX90118	Canola	plastid	9.09	2.02
CDX78746	Canola	cytosol	2.48	1.96
CDX70758	Canola	cytosol	1.65	1.69
CDX78740	Canola	cytosol	4.13	1.24
CDY12173	Canola	cytosol	1.65	0.58
CDY28614	Canola	cytosol	1.65	0.51
CDY68511	Canola	cytosol, mitochondrion	1.65	0.49
CDX87977	Canola	cytosol	0.83	0.44
CDY48414	Canola	cytosol	0.0	0.0
CDY48416	Canola	cytosol	0.0	0.0
CDX95824	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	MapMan:35.1	GO:A0A078FGN5
UniProt:A0A078FGN5	EnsemblPlants:CDY12174	ProteinID:CDY12174	ProteinID:CDY12174.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00061180001	InterPro:Glutamate_decarboxylase	PFAM:PF00282
PANTHER:PTHR43321	PANTHER:PTHR43321:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	UniParc:UPI0004EEC030

Description

BnaC04g12040DBnaC04g12040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGN5]

Coordinates

chrLK032018:-:144684..149428

Molecular Weight (calculated)

13764.5 Da

IEP (calculated)

3.933

GRAVY (calculated)

-0.081

Length

121 amino acids

Sequence
(BLAST)

001: MVLSQTTPES NEPVSSTFGS RYALTALPKY EIGESSIPKD AAYQIIKDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMDSI NKNYVDMDEY PVTTELQLDC
101: SMLLLVTFSM TVFHQLWINL D

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.