CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85460	Canola	cytosol	90.45	95.09
CDX78740	Canola	cytosol	76.83	93.56
CDY68511	Canola	cytosol, mitochondrion	76.22	92.59
CDY16935	Canola	cytosol	92.28	92.28
AT5G17330.1	Thale cress	cytosol	89.23	87.45
CDX78739	Canola	cytosol, plastid	87.4	86.69
VIT_04s0079g00600.t01	Wine grape	cytosol	81.5	82.17
GSMUA_Achr8P30730_001	Banana	cytosol	78.86	81.86
CDY12173	Canola	cytosol	57.52	81.79
CDY15807	Canola	cytosol	81.5	81.34
CDY28614	Canola	cytosol	64.63	81.12
CDY09396	Canola	cytosol	81.1	80.93
VIT_01s0011g06600.t01	Wine grape	cytosol	81.3	80.81
KRH30893	Soybean	endoplasmic reticulum	66.87	80.64
KRH72934	Soybean	cytosol	82.11	80.32
CDY04111	Canola	cytosol	80.28	80.12
CDX78742	Canola	cytosol	15.45	80.0
CDY56295	Canola	cytosol	80.28	79.96
GSMUA_Achr4P31270_001	Banana	cytosol	79.06	79.55
KRH17286	Soybean	cytosol	81.3	79.52
CDY07474	Canola	cytosol	79.47	79.15
KRG97998	Soybean	endoplasmic reticulum	80.69	78.93
CDY39258	Canola	cytosol	79.06	78.74
CDX92158	Canola	cytosol	42.07	74.73
CDX70758	Canola	cytosol	17.89	74.58
CDY46883	Canola	cytosol	71.95	73.29
CDY49834	Canola	cytosol	71.14	72.46
CDX78746	Canola	cytosol	22.36	71.9
CDX70751	Canola	cytosol, plastid	89.84	68.85
CDX87977	Canola	cytosol	30.69	66.23
CDX95824	Canola	cytosol	28.46	63.35
CDX87975	Canola	cytosol	12.8	61.76
CDY71197	Canola	cytosol	11.18	52.88
CDY12174	Canola	cytosol	12.2	49.59
CDY11756	Canola	plastid	19.31	17.46
CDX90118	Canola	plastid	19.31	17.46
CDY48416	Canola	cytosol	7.72	16.38
CDY48414	Canola	cytosol	7.72	16.38

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078EL20	EnsemblPlants:CDY02710	ProteinID:CDY02710	ProteinID:CDY02710.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00114861001	InterPro:Glutamate_decarboxylase
InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI0004EE6177	SEG:seg

Description

BnaC02g07250D

Coordinates

chrLK031936:-:1023848..1030841

Molecular Weight (calculated)

55855.3 Da

IEP (calculated)

6.743

GRAVY (calculated)

-0.273

Length

492 amino acids

Sequence
(BLAST)

001: MVLSHAASDT DVSHSTFASP YVRTSLPRFK MPGNLIPNEA AYQIMHEELM LDGNSRLNLA SFLTTWMEPE CDKLIMASIN KNYVEKHAYP ISTELQNRCV
101: NMIANLFNAP LGETETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP FNKPNIVTGA NVHQVCWEKF ARYFEVELKE VKLSEGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVL KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYEGIGWVVW RTKEDLPEEL
301: IFHVNYLGVD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN TIVLRKGLEK TKKFNIVSKD QGVPLVAFSL KDSSSHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR KSEANGDKLR VTVKKSDMEM PREIINGWKK LVSDRKKTNG IC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.