CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12173	Canola	cytosol	85.97	97.4
CDY68511	Canola	cytosol, mitochondrion	83.93	81.23
CDX78740	Canola	cytosol	82.91	80.45
Bra021090.1-P	Field mustard	cytosol	100.0	79.35
CDY07474	Canola	cytosol	94.64	75.1
CDY39258	Canola	cytosol	94.39	74.9
CDX87977	Canola	cytosol	41.33	71.05
CDX87975	Canola	cytosol	18.37	70.59
CDY16935	Canola	cytosol	83.16	66.26
CDY04111	Canola	cytosol	82.14	65.31
CDY15807	Canola	cytosol	81.89	65.11
CDY09396	Canola	cytosol	81.89	65.11
CDY02710	Canola	cytosol	81.12	64.63
VIT_04s0079g00600.t01	Wine grape	cytosol	80.1	64.34
CDX95824	Canola	cytosol	36.22	64.25
CDY56295	Canola	cytosol	80.87	64.17
GSMUA_Achr8P30730_001	Banana	cytosol	77.55	64.14
VIT_01s0011g06600.t01	Wine grape	cytosol	80.61	63.84
CDX78739	Canola	cytosol, plastid	80.36	63.51
CDX85460	Canola	cytosol	72.96	61.11
GSMUA_Achr4P31270_001	Banana	cytosol	75.77	60.74
CDY46883	Canola	cytosol	72.7	59.01
CDX70758	Canola	cytosol	17.6	58.47
CDY49834	Canola	cytosol	71.43	57.97
CDX78742	Canola	cytosol	13.52	55.79
CDX78746	Canola	cytosol	21.43	54.9
CDX70751	Canola	cytosol, plastid	82.91	50.62
CDX92158	Canola	cytosol	33.93	48.01
CDY48416	Canola	cytosol	9.18	15.52
CDY48414	Canola	cytosol	9.18	15.52
CDY11756	Canola	plastid	20.66	14.89
CDX90118	Canola	plastid	20.66	14.89
CDY71197	Canola	cytosol	0.77	2.88
CDY12174	Canola	cytosol	0.51	1.65

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078GTW7	UniProt:A0A078GTW7	EnsemblPlants:CDY28614	ProteinID:CDY28614	ProteinID:CDY28614.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00040644001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2
MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0004EF21D1	:	:	:	:	:

Description

BnaA06g19240DGlutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:A0A078GTW7]

Coordinates

chrLK032223:-:458301..460126

Molecular Weight (calculated)

44435.9 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.155

Length

392 amino acids

Sequence
(BLAST)

001: MIARLFNAPL GDTETAMGVG TVGSSEAIML AGLAFKRNWQ NKRKAEGKTY DKPNIVTGAN VQVCWEKFAR YFEVELKEIK LSEGYYVMDP EKAVEMVDEN
101: TICVAAILGS TLTGEFEDVK RLNDLLVKKN DATGWNTPIH VDAASGGFIA PFIYPELEWD FRLPLVKSIN VSGHKYGLVY AGIGWVVWRT QHDLPDELIF
201: HINYLGADQP TFTLNFSKGS SQIIAQYYQL IRLGFEGYKN VMENCRENML VLKEGIEKTE RFNIVSKDVG VPLVAFSLKG QSFHSEFEIS EMLRRFGWIV
301: PAYTMPADAE HITVLRVVIR EDFSRTLAER LVADILKVLH ELDTLPSKIS RKMGAEDFGN VKGKKVKREK LMEVIVGWRK FVKDRKKMNG VC

Best Arabidopsis Sequence Match ( AT1G65960.1 )
(BLAST)

001: MLAGLAFKRK WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VNLSEGYYVM DPDKAAEMVD ENTICVAAIL GSTLNGEFED VKRLNDLLVK
101: KNEETGWNTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RAAEDLPEEL IFHINYLGAD QPTFTLNFSK GSSQIIAQYY
201: QLIRLGFEGY KNVMENCIEN MVVLKEGIEK TERFNIVSKD QGVPVVAFSL KDHSFHNEFE ISEMLRRFGW IVPAYTMPAD AQHITVLRVV IREDFSRTLA
301: ERLVADISKV LHELDTLPSK ISKKMGIEGI AENVKEKKME KEILMEVIVG WRKFVKERKK MNGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.