CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004137.1-P	Field mustard	cytosol	79.15	99.74
CDY07474	Canola	cytosol	99.39	99.39
CDY28614	Canola	cytosol	74.9	94.39
CDY12173	Canola	cytosol	65.38	93.35
AT1G65960.2	Thale cress	cytosol	92.11	92.11
CDY16935	Canola	cytosol	83.6	83.94
CDX78740	Canola	cytosol	68.02	83.17
CDY68511	Canola	cytosol, mitochondrion	68.02	82.96
VIT_04s0079g00600.t01	Wine grape	cytosol	81.78	82.79
CDY09396	Canola	cytosol	82.39	82.56
CDY15807	Canola	cytosol	82.39	82.56
GSMUA_Achr8P30730_001	Banana	cytosol	78.74	82.07
CDY04111	Canola	cytosol	81.78	81.95
CDY56295	Canola	cytosol	80.77	80.77
CDX78739	Canola	cytosol, plastid	80.77	80.44
VIT_01s0011g06600.t01	Wine grape	cytosol	79.96	79.8
CDY02710	Canola	cytosol	78.74	79.06
CDY71197	Canola	cytosol	16.6	78.85
GSMUA_Achr4P31270_001	Banana	cytosol	76.72	77.51
CDX85460	Canola	cytosol	73.08	77.14
CDX92158	Canola	cytosol	42.71	76.17
CDY46883	Canola	cytosol	74.09	75.78
CDY49834	Canola	cytosol	73.28	74.95
CDY12174	Canola	cytosol	17.61	71.9
CDX87975	Canola	cytosol	14.37	69.61
CDX87977	Canola	cytosol	31.78	68.86
CDX95824	Canola	cytosol	29.55	66.06
CDX70751	Canola	cytosol, plastid	82.79	63.71
CDX70758	Canola	cytosol	14.78	61.86
CDX78746	Canola	cytosol	17.21	55.56
CDX78742	Canola	cytosol	10.12	52.63
CDY11756	Canola	plastid	18.83	17.1
CDX90118	Canola	plastid	18.83	17.1
CDY48416	Canola	cytosol	7.29	15.52
CDY48414	Canola	cytosol	7.29	15.52

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078HR70	UniProt:A0A078HR70	EnsemblPlants:CDY39258	ProteinID:CDY39258	ProteinID:CDY39258.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00067484001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2
MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0004EE0D18	:	:	:	:	:

Description

BnaC06g27330DGlutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:A0A078HR70]

Coordinates

chrLK032444:-:51114..55484

Molecular Weight (calculated)

56148.7 Da

IEP (calculated)

5.454

GRAVY (calculated)

-0.221

Length

494 amino acids

Sequence
(BLAST)

001: MVLSRAATGS EENVCSTFGS RYVRTALPKY EIGESSIPKE AAYQIIKDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMESI NKNYVDMDEY PVTTELQNRC
101: VNMIARLFNA PLGETETAMG VGTVGSSEAI MLAGLAFKRN WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPDKAAEMVD
201: ENTICVAAIL GSTLNGEFED VKRLNDLLVK KNEETGWNTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RTQQDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQIIAQYY QLIRLGFEGY KNVMENCREN MVVLREGIEK TERFNIVSKE VGVPLVAFSL KDHSFHNEFE ISEMLRRFGW
401: IVPAYTMPAD AQHITVLRVV IREDFSRTLA ERLVADIVKV LHELDTLPSK ISRKMGAEDF GNMKGKKVER DILMEVIVGW RKFVKERKKM NGVC

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.