CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46883	Canola	cytosol	98.76	98.76
Bra021272.1-P	Field mustard	cytosol	98.34	96.54
AT3G17760.1	Thale cress	cytosol	94.2	92.11
CDX92158	Canola	cytosol	52.8	92.06
CDX95824	Canola	cytosol	41.82	91.4
KRH38971	Soybean	cytosol	78.67	76.31
KRH09492	Soybean	cytosol	78.47	75.95
CDY15807	Canola	cytosol	75.98	74.44
CDY09396	Canola	cytosol	75.98	74.44
VIT_17s0000g00920.t01	Wine grape	cytosol	77.43	74.06
CDY16935	Canola	cytosol	75.36	73.98
CDY56295	Canola	cytosol	75.36	73.68
CDY04111	Canola	cytosol	75.16	73.63
CDY39258	Canola	cytosol	74.95	73.28
CDY07474	Canola	cytosol	74.74	73.08
CDX78740	Canola	cytosol	60.66	72.52
CDX78739	Canola	cytosol, plastid	73.71	71.77
PGSC0003DMT400079706	Potato	cytosol	74.33	71.51
CDY28614	Canola	cytosol	57.97	71.43
CDY68511	Canola	cytosol, mitochondrion	59.83	71.36
Solyc03g098240.2.1	Tomato	plastid	74.12	71.31
CDY02710	Canola	cytosol	72.46	71.14
CDY12173	Canola	cytosol	50.52	70.52
CDX85460	Canola	cytosol	66.25	68.38
CDY71197	Canola	cytosol	13.66	63.46
CDX87977	Canola	cytosol	27.95	59.21
CDY12174	Canola	cytosol	14.29	57.02
CDX70751	Canola	cytosol, plastid	74.74	56.23
CDX70758	Canola	cytosol	12.63	51.69
CDX87975	Canola	cytosol	10.35	49.02
CDX78746	Canola	cytosol	13.66	43.14
CDX78742	Canola	cytosol	7.25	36.84
CDY11756	Canola	plastid	20.7	18.38
CDX90118	Canola	plastid	20.7	18.38
CDY48416	Canola	cytosol	7.66	15.95
CDY48414	Canola	cytosol	7.66	15.95

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078IK76	UniProt:A0A078IK76	EnsemblPlants:CDY49834	ProteinID:CDY49834	ProteinID:CDY49834.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00093890001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF8
MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0004EE53F2	SEG:seg	:	:	:	:

Description

BnaC01g34660DGlutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:A0A078IK76]

Coordinates

chrLK032862:+:25435..27385

Molecular Weight (calculated)

54566.5 Da

IEP (calculated)

5.519

GRAVY (calculated)

-0.140

Length

483 amino acids

Sequence
(BLAST)

001: MALARNSDSE EHLHSTFASR YVRAVIPRFK MPDNSMPKDA AYQVISDELM LDGNPRLNLA SFVTTWMEPE CDKLIMESVN KNYVDMDEYP VTTELQNRCV
101: NMIANLFHAP VGEDEAAIGC GTVGSSEAIM LAGLAFKRKW QQRRRAQGLP TDNPNIVTGA NVQVCWEKFA RYFEVELKEV KLSEGYYVMD PAKAVEMVDE
201: NTICIAAILG STLTGEFEDV KTLNDLLAEK NAETGWDVSI HVDSASGGFI APFLYPDLEW DFRLPWVKSI NVSGHKYGLV YAGVGWIVWR TKDDLPEDLV
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ FIRLGFEGYN NIMENCMDNA RRLREGIEMT GKFNIVSKYI GVPLVAFSLK DSSKHTVFEI AESLRKFGWI
401: IPAYTMPADA QHIAVLRVVI REDFNRGLAD RLITHILQVL KEIEGLPSRI AHIAAAAKTA KMSLEDIAKY WKRLVENKRN IVC

Best Arabidopsis Sequence Match ( AT3G17760.2 )
(BLAST)

001: MVLATNSDSD EHLHSTFASR YVRAVVPRFK MPDHCMPKDA AYQVINDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSVN KNYVDMDEYP VTTELQNRCV
101: NMIANLFHAP VGEDEAAIGC GTVGSSEAIM LAGLAFKRKW QHRRKAQGLP IDKPNIVTGA NVQVCWEKFA RYFEVELKEV KLSEDYYVMD PAKAVEMVDE
201: NTICVAAILG STLTGEFEDV KQLNDLLAEK NAETGWETPI HVDAASGGFI APFLYPDLEW DFRLPWVKSI NVSGHKYGLV YAGVGWVVWR TKDDLPEELV
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ FIRLGFEGYK NIMENCMDNA RRLREGIEMT GKFNIVSKDI GVPLVAFSLK DSSKHTVFEI AESLRKFGWI
401: IPAYTMPADA QHIAVLRVVI REDFSRGLAD RLITHIIQVL KEIEGLPSRI AHLAAAAAVS GDDEEVKVKT AKMSLEDITK YWKRLVEHKR NIVC

Arabidopsis Description

GAD5Glutamate decarboxylase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.