CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09492	Soybean	cytosol	96.79	96.59
CDY46883	Canola	cytosol	77.31	79.71
PGSC0003DMT400079706	Potato	cytosol	80.32	79.68
GSMUA_Achr8P22810_001	Banana	cytosol	75.7	79.54
CDX92158	Canola	cytosol	43.98	79.06
AT3G17760.1	Thale cress	cytosol	78.31	78.95
CDY49834	Canola	cytosol	76.31	78.67
Solyc03g098240.2.1	Tomato	plastid	79.12	78.49
VIT_17s0000g00920.t01	Wine grape	cytosol	79.52	78.42
Bra022241.1-P	Field mustard	cytosol	76.91	78.16
Bra021272.1-P	Field mustard	cytosol	77.11	78.05
KRH72934	Soybean	cytosol	78.31	77.53
Zm00001d003531_P002	Maize	plastid	75.9	77.3
EES12248	Sorghum	plastid	75.7	77.25
Os04t0447400-01	Rice	plasma membrane	74.9	77.07
TraesCS2D01G313500.1	Wheat	plastid	75.1	76.95
HORVU2Hr1G078560.1	Barley	plastid	74.9	76.75
TraesCS2A01G315300.1	Wheat	plastid	74.9	76.75
KRH17286	Soybean	cytosol	77.51	76.74
KRG97998	Soybean	endoplasmic reticulum	76.31	75.55
GSMUA_Achr7P02370_001	Banana	cytosol	75.5	75.35
KRH30893	Soybean	endoplasmic reticulum	61.45	75.0
TraesCS2B01G333700.1	Wheat	plastid	75.3	73.1
CDX95824	Canola	cytosol	31.93	71.95
KRH42467	Soybean	nucleus	70.88	71.6
KRH42468	Soybean	cytosol	70.48	71.2
KRH58569	Soybean	cytosol	69.68	70.39
AT3G17720.1	Thale cress	mitochondrion	26.91	69.07
KRH42466	Soybean	cytosol	64.86	68.58
KRH01552	Soybean	plastid, vacuole	20.88	19.44
KRH70554	Soybean	endoplasmic reticulum	20.48	19.03
KRH25771	Soybean	cytosol	4.22	18.1

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100796475	Gene3D:3.40.640.10
Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	EMBL:ACUP02005901	EnsemblPlantsGene:GLYMA_09G168900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	UniProt:I1L3Z2
InterPro:IPR015421	EnsemblPlants:KRH38971	ProteinID:KRH38971	ProteinID:KRH38971.1	PFAM:PF00282	PANTHER:PTHR43321
PANTHER:PTHR43321:SF8	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TIGRFAMs:TIGR01788	UniParc:UPI0002338BA8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:39358872..39363528

Molecular Weight (calculated)

56002.4 Da

IEP (calculated)

5.561

GRAVY (calculated)

-0.177

Length

498 amino acids

Sequence
(BLAST)

001: MVLTSTATHP DEKDQSLNST FASRYVRDPI PKFKMPEKSI PKDAAFQIIN DELMLDGAPR LNLASFVTTW MEPECDKLIM ASLNKNYVDM DEYPVTTELQ
101: NRCVNIIANL FHAPISEEET AVGVGTVGSS EAIMLAGLAF KRKWQTKRKA EGKPYDKPNI VTGANVQVCW EKFARYFEVE LKEVKLKEGY YVMDPAKAVE
201: MVDENTICVA AILGSTMTGE FEDVKLLNEL LTEKNKETGW DTPIHVDAAS GGFIAPFLYP DLEWDFRLPL VKSINVSGHK YGLVYPGVGW VVWRSKDDLP
301: DELVFHINYL GSDQPTFTLN FSKGSSQIIA QYYQLIRLGF EGYKNIMENC LENARVLKEG IERTGRFNII SKDIGVPLVA FSLKDSSQHT VFEIADHLRK
401: FGWIVPAYTM PPDAQHIAVL RVVIREDFSR GLAERLAADI EKVVKLLDTL PSPLTTKVAH ITAITSETSE KVKSAIETQK EIALYWKRLV DGKRLGAC

Best Arabidopsis Sequence Match ( AT3G17760.2 )
(BLAST)

001: MVLATNSDSD EHLHSTFASR YVRAVVPRFK MPDHCMPKDA AYQVINDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSVN KNYVDMDEYP VTTELQNRCV
101: NMIANLFHAP VGEDEAAIGC GTVGSSEAIM LAGLAFKRKW QHRRKAQGLP IDKPNIVTGA NVQVCWEKFA RYFEVELKEV KLSEDYYVMD PAKAVEMVDE
201: NTICVAAILG STLTGEFEDV KQLNDLLAEK NAETGWETPI HVDAASGGFI APFLYPDLEW DFRLPWVKSI NVSGHKYGLV YAGVGWVVWR TKDDLPEELV
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ FIRLGFEGYK NIMENCMDNA RRLREGIEMT GKFNIVSKDI GVPLVAFSLK DSSKHTVFEI AESLRKFGWI
401: IPAYTMPADA QHIAVLRVVI REDFSRGLAD RLITHIIQVL KEIEGLPSRI AHLAAAAAVS GDDEEVKVKT AKMSLEDITK YWKRLVEHKR NIVC

Arabidopsis Description

GAD5Glutamate decarboxylase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.