Factsheet for Solyc03g098240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079706	Potato	cytosol	97.41	97.41
KRH09492	Soybean	cytosol	79.08	79.56
Zm00001d003531_P002	Maize	plastid	77.49	79.55
KRH38971	Soybean	cytosol	78.49	79.12
GSMUA_Achr8P22810_001	Banana	cytosol	74.3	78.69
CDX92158	Canola	cytosol	43.23	78.34
HORVU2Hr1G078560.1	Barley	plastid	75.7	78.19
EES12248	Sorghum	plastid	75.9	78.07
TraesCS2D01G313500.1	Wheat	plastid	74.9	77.37
Os04t0447400-01	Rice	plasma membrane	74.5	77.27
TraesCS2A01G315300.1	Wheat	plastid	74.5	76.95
GSMUA_Achr7P02370_001	Banana	cytosol	76.49	76.95
VIT_17s0000g00920.t01	Wine grape	cytosol	76.89	76.44
Solyc04g025530.2.1	Tomato	plastid	74.1	75.46
CDY46883	Canola	cytosol	72.31	75.16
AT3G17760.1	Thale cress	cytosol	73.71	74.9
Solyc11g011920.1.1	Tomato	plastid	74.9	74.75
Solyc05g054050.2.1	Tomato	plastid	73.51	74.25
CDY49834	Canola	cytosol	71.31	74.12
Bra022241.1-P	Field mustard	cytosol	72.31	74.08
Solyc01g005000.2.1	Tomato	cytosol	71.12	73.76
Bra021272.1-P	Field mustard	cytosol	72.11	73.58
TraesCS2B01G333700.1	Wheat	plastid	74.7	73.1
AT3G17720.1	Thale cress	mitochondrion	26.69	69.07
CDX95824	Canola	cytosol	27.69	62.9
Solyc05g015860.2.1	Tomato	plastid	19.32	18.03

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EMBL:AB359913	UniProt:B1Q3F0	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF8
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc03g098240.2	EnsemblPlants:Solyc03g098240.2.1
TIGRFAMs:TIGR01788	UniParc:UPI0001720464	SEG:seg	:	:	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:B1Q3F0]

Coordinates

chr3:+:60597006..60601439

Molecular Weight (calculated)

56771.3 Da

IEP (calculated)

6.211

GRAVY (calculated)

-0.226

Length

502 amino acids

Sequence
(BLAST)

001: MVLTTTSIRD SEESLHCTFA SRYVQEPLPK FKIPKKSMPK EAAYQIVNDE LMLDGNPRLN LASFVSTWME PECDKLIMSS INKNYVDMDE YPVTTELQNR
101: CVNMLAHLFH APVGDDETAV GVGTVGSSEA IMLAGLAFKR KWQSKRKAEG KPFDKPNIVT GANVQVCWEK FARYFEVELK EVKLKEGYYV MDPAKAVEIV
201: DENTICVAAI LGSTLTGEFE DVKLLNELLT KKNKETGWET PIHVDAASGG FIAPFLWPDL EWDFRLPLVK SINVSGHKYG LVYAGVGWVI WRSKEDLPDE
301: LVFHINYLGS DQPTFTLNFS KGSYQIIAQY YQLIRLGFEG YKDVMKNCLS NAKVLTEGIT KMGRFDIVSK DVGVPVVAFS LRDSSKYTVF EVSEHLRRFG
401: WIVPAYTMPP DAEHIAVLRV VIREDFSHSL AERLVSDIEK ILSELDTQPP RLPTKAVRVT AEEVRDDKGD GLHHFHMDTV ETQKDIIKHW RKIAGKKTSG
501: VC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.