Factsheet for Solyc05g054050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011920.1.1	Tomato	plastid	89.34	88.27
VIT_04s0079g00600.t01	Wine grape	cytosol	85.92	87.5
GSMUA_Achr8P30730_001	Banana	cytosol	82.09	86.08
VIT_01s0011g06600.t01	Wine grape	cytosol	84.51	84.85
Solyc04g025530.2.1	Tomato	plastid	84.1	84.79
EER95206	Sorghum	cytosol	83.1	84.29
EER93555	Sorghum	cytosol	83.3	83.98
Os03t0720300-01	Rice	plastid	82.9	83.74
TraesCS4B01G052300.1	Wheat	cytosol	83.3	83.64
TraesCS4A01G262600.1	Wheat	cytosol	83.3	83.64
TraesCS4D01G052500.1	Wheat	plastid	83.3	83.64
Zm00001d047981_P001	Maize	cytosol	82.29	83.47
TraesCS4A01G369200.1	Wheat	cytosol	76.06	83.26
Zm00001d033805_P001	Maize	cytosol, extracellular	82.5	83.16
HORVU4Hr1G008700.1	Barley	cytosol	82.7	83.03
Os03t0236200-01	Rice	plasma membrane	82.09	82.93
Solyc01g005000.2.1	Tomato	cytosol	80.68	82.85
GSMUA_Achr4P31270_001	Banana	cytosol	80.48	81.8
HORVU4Hr1G064790.6	Barley	cytosol	80.68	80.68
TraesCS4B01G231400.1	Wheat	cytosol	81.09	80.6
TraesCS4A01G075600.1	Wheat	cytosol	80.48	80.0
TraesCS4D01G232700.1	Wheat	cytosol	81.49	76.7
Solyc03g098240.2.1	Tomato	plastid	74.25	73.51
CDX70758	Canola	cytosol	14.89	62.71
Bra006399.1-P	Field mustard	cytosol, mitochondrion	11.07	57.89
CDX78742	Canola	cytosol	11.07	57.89
CDX78746	Canola	cytosol	17.5	56.86
Bra006404.1-P	Field mustard	cytosol	17.5	56.86
Os05t0421750-00	Rice	mitochondrion	19.11	36.4
Solyc05g015860.2.1	Tomato	plastid	19.92	18.4

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	UniProt:K4C284	EMBL:KC787699	PFAM:PF00282
PANTHER:PTHR43321	PANTHER:PTHR43321:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc05g054050.2	EnsemblPlants:Solyc05g054050.2.1	TIGRFAMs:TIGR01788	UniParc:UPI00027668F0	SEG:seg	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:K4C284]

Coordinates

chr5:-:64027583..64031435

Molecular Weight (calculated)

56174.5 Da

IEP (calculated)

5.696

GRAVY (calculated)

-0.228

Length

497 amino acids

Sequence
(BLAST)

001: MVISKAASES DLSVHSTFAS RYVRVSLPRF KMPENSIPKD AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMDSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGEGEAAVG VGTVGSSEAI MLAGLAFKRK WQNKMKAQGK PHDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLEDGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKRLNDLLVE KNKETGWDTP IHVDAASGGF IAPFIYPEIE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGYEGY KNIMENCQEN TRVLREGLEK IERFNIVSKE IGVPLVAFSL KDNSKHNEFE ISEHLRRFGW
401: IVPAYTMPAN AEHVTVLRVV IREDFSRTLA ERLVGDIVKV LHELDNLPAR VTAKLAAIAE GEGSSGHKKS PMEVQLEITN VWKKFVAEKK KTKNVIC

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.