Factsheet for Os03t0236200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047981_P001	Maize	cytosol	94.92	95.31
EER95206	Sorghum	cytosol	94.72	95.1
HORVU4Hr1G064790.6	Barley	cytosol	90.85	89.94
TraesCS4A01G369200.1	Wheat	cytosol	82.32	89.21
TraesCS4B01G231400.1	Wheat	cytosol	90.45	89.0
TraesCS4A01G075600.1	Wheat	cytosol	90.04	88.6
GSMUA_Achr8P30730_001	Banana	cytosol	84.55	87.76
Os03t0720300-01	Rice	plastid	86.18	86.18
VIT_04s0079g00600.t01	Wine grape	cytosol	85.37	86.07
VIT_01s0011g06600.t01	Wine grape	cytosol	85.98	85.45
GSMUA_Achr4P31270_001	Banana	cytosol	84.15	84.66
TraesCS4D01G232700.1	Wheat	cytosol	90.85	84.66
AT5G17330.1	Thale cress	cytosol	85.16	83.47
Solyc11g011920.1.1	Tomato	plastid	84.15	82.31
PGSC0003DMT400034693	Potato	cytosol	83.94	82.27
KRH72934	Soybean	cytosol	83.94	82.11
KRG97998	Soybean	endoplasmic reticulum	83.94	82.11
Solyc05g054050.2.1	Tomato	plastid	82.93	82.09
KRH17286	Soybean	cytosol	83.33	81.51
KRH30893	Soybean	endoplasmic reticulum	67.07	80.88
AT1G65960.2	Thale cress	cytosol	79.27	78.95
Os04t0447400-01	Rice	plasma membrane	77.24	78.51
AT2G02000.1	Thale cress	cytosol	79.06	77.8
Os08t0465800-01	Rice	cytosol, extracellular, plasma membrane, plastid	76.83	76.06
AT2G02010.2	Thale cress	plastid	81.71	73.76
Os04t0447800-01	Rice	cytosol, plasma membrane	70.33	69.2
CDX70758	Canola	cytosol	15.24	63.56
CDX78746	Canola	cytosol	18.29	58.82
Bra006404.1-P	Field mustard	cytosol	18.29	58.82
CDX78742	Canola	cytosol	10.37	53.68
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.37	53.68
Os05t0421750-00	Rice	mitochondrion	22.56	42.53
Os01t0100900-01	Rice	nucleus	19.92	18.18

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:4332184	ProteinID:AAP79441.1	ProteinID:ABF94841.1	EMBL:AY187941	ProteinID:BAF11404.1
ProteinID:BAS83148.1	ProteinID:EAZ26194.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488
GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	EnsemblPlantsGene:Os03g0236200	EnsemblPlants:Os03t0236200-01
PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase
UniProt:Q84U04	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00000060B3	RefSeq:XP_015627912.1	SEG:seg

Description

GLUTAMATE DECARBOXYLASESimilar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15). (Os03t0236200-01)

Coordinates

chr3:+:7181080..7184036

Molecular Weight (calculated)

56034.6 Da

IEP (calculated)

5.878

GRAVY (calculated)

-0.225

Length

492 amino acids

Sequence
(BLAST)

001: MVLSKAVSES DMSVHSTFAS RYVRASLPRY RMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMAAI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFHA PLGEDETAVG VGTVGSSEAI MLAGLAFKRR WQNKRKAEGK PFDKPNIITG ANVQVCWEKF ARYFEVELKE VKLRDGYYVM DPEKAVDMVN
201: ENTICVAAIL GSTLNGEFED VKLLNDLLDK KNKETGWETP IHVDAASGGF IAPFLYPELE WDFRLPWVKS INVSGHKYGL VYAGIGWCIW RNKEDLPEEL
301: IFHINYLGTD QPTFTLNFSK GSSQVIAQYY QLIRHGFEGY RNIMENCHEN AMVLKEGLVK TGRFDIVSKD EGVPLVAFSL KDRSRHDEFE ISDMLRRFGW
401: IVPAYTMPPD AQHVTVLRVV IREEFSRTLA ERLVLDIEKV MYQLDALPSR LMPPVPPAPL LVVAKKSELE TQRSVTEAWK KFVLAKRTNG VC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.