Factsheet for Os08t0465800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular, cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 24083427
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G523200.1	Wheat	cytosol, plastid	81.69	81.04
HORVU3Hr1G003050.7	Barley	cytosol	79.68	80.82
HORVU3Hr1G112860.1	Barley	cytosol	80.68	80.68
TraesCS3A01G515300.1	Wheat	cytosol, plastid	81.29	80.64
TraesCS3B01G583600.1	Wheat	cytosol, plastid	81.09	80.44
TraesCS3A01G022600.3	Wheat	cytosol	78.87	80.0
TraesCS3B01G022900.1	Wheat	cytosol	78.67	79.8
TraesCS3D01G023900.1	Wheat	cytosol	78.67	79.8
Os04t0447400-01	Rice	plasma membrane	76.66	78.72
Os03t0720300-01	Rice	plastid	77.87	78.66
Os03t0236200-01	Rice	plasma membrane	76.06	76.83
OQU80616	Sorghum	plastid	87.12	72.41
Os04t0447800-01	Rice	cytosol, plasma membrane	69.42	69.0
Zm00001d031749_P005	Maize	cytosol	67.61	64.24
Os05t0421750-00	Rice	mitochondrion	17.3	32.95
Os01t0100900-01	Rice	nucleus	19.11	17.63

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:4345787	EMBL:AK121088	ProteinID:BAD10771.1	ProteinID:BAT05798.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase
InterPro:IPR015421	EnsemblPlantsGene:Os08g0465800	EnsemblPlants:Os08t0465800-01	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF7
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	UniProt:Q6YSB2	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI000023B177	RefSeq:XP_015650124.1	SEG:seg	:	:	:

Description

GLUTAMATE DECARBOXYLASE 1Similar to Glutamate decarboxylase. (Os08t0465800-01);Similar to Glutamate decarboxylase. (Os08t0465800-02)

Coordinates

chr8:-:22878735..22882730

Molecular Weight (calculated)

56199.5 Da

IEP (calculated)

5.296

GRAVY (calculated)

-0.187

Length

497 amino acids

Sequence
(BLAST)

001: MVLSHASSGR DDAVRCTFAT RYACETLPRF RMPEQSIPRE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMDSV NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PIKEDETAIG VGTVGSSEAI MLAGLAFKRK WQNKRKEQGK PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPVKAVEMVD
201: ENTICVAAIL GSTLTGEFED VKLLNNLLTE KNKETGWDVP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYPGVGWVIW RSKEDLPEEL
301: IFHINYLGTD QPTFTLNFSK GSSQIIAQYY QLIRLGFEGY KNIMQNCMEN TAILREGIEA TGRFEILSKE AGVPLVAFSL KDSGRYTVFD ISEHLRRFGW
401: IVPAYTMPAN AEHVAVLRVV IREDFSRSLA ERLVSDIVKI LHELDAHSAQ VLKISSAIAK QQSGDDGVVT KKSVLETERE IFAYWRDQVK KKQTGIC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.