Factsheet for Os04t0447800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G334000.1	Wheat	cytosol	87.4	87.58
TraesCS2A01G315800.1	Wheat	cytosol	87.2	87.37
TraesCS2D01G313800.1	Wheat	cytosol	87.0	87.17
EES10890	Sorghum	cytosol	86.6	85.24
Zm00001d003522_P002	Maize	cytosol	81.8	80.51
GSMUA_Achr7P12330_001	Banana	cytosol	79.0	78.53
VIT_01s0011g06610.t01	Wine grape	cytosol	73.6	72.02
Os04t0447400-01	Rice	plasma membrane	69.2	71.49
Os03t0720300-01	Rice	plastid	70.2	71.34
Os03t0236200-01	Rice	plasma membrane	69.2	70.33
Os08t0465800-01	Rice	cytosol, extracellular, plasma membrane, plastid	69.0	69.42
HORVU2Hr1G078580.10	Barley	cytosol	71.8	65.63
Os05t0421750-00	Rice	mitochondrion	14.6	27.97
Os01t0100900-01	Rice	nucleus	19.0	17.63

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:4335977	ProteinID:BAF14833.1	ProteinID:BAS89421.1	ProteinID:CAD40877.2	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase
InterPro:IPR015421	EnsemblPlantsGene:Os04g0447800	EnsemblPlants:Os04t0447800-01	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF4
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	UniProt:Q7XV18	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI000021C628	RefSeq:XP_015633915.1	SEG:seg	:	:	:

Description

GLUTAMATE DECARBOXYLASE 2Glutamate decarboxylase (EC 4.1.1.15). (Os04t0447800-01)

Coordinates

chr4:+:22330191..22332343

Molecular Weight (calculated)

55633.0 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.099

Length

500 amino acids

Sequence
(BLAST)

001: MVLTHVEAVE EGSEAAAAVF ASRYVQDPVP RYELGERSIS KDAAYQIVHD ELLLDSSPRL NLASFVTTWM EPECDRLILE AINKNYADMD EYPVTTELQN
101: RCVNIIARLF NAPVGDGEKA VGVGTVGSSE AIMLAGLAFK RRWQNRRKAA GKPHDKPNIV TGANVQVCWE KFARYFEVEL KEVKLTEGCY VMDPVKAVDM
201: VDENTICVAA ILGSTLTGEF EDVRRLNDLL AAKNKRTGWD TPIHVDAASG GFIAPFIYPE LEWDFRLPLV KSINVSGHKY GLVYAGVGWV IWRNKEDLPE
301: ELIFHINYLG ADQPTFTLNF SKGSSQIIAQ YYQFLRLGFE GYKSVMKNCM ESARTLREGL EKTGRFTIIS KEEGVPLVAF TFKDGAGAQA FRLSSGLRRY
401: GWIVPAYTMP AALEHMTVLR VVVREDFGRP LAERFLSHVR MALDEMDLAA RAPVPRVQLT IELGPARTAG EEASIRVVKS EAVPVRKSVP LVAGKTKGVC

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.