Factsheet for VIT_01s0011g06610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0447800-01	Rice	cytosol, plasma membrane	72.02	73.6
TraesCS2B01G334000.1	Wheat	cytosol	71.23	72.95
VIT_01s0011g06600.t01	Wine grape	cytosol	70.45	72.73
TraesCS2D01G313800.1	Wheat	cytosol	70.84	72.55
TraesCS2A01G315800.1	Wheat	cytosol	70.45	72.14
VIT_04s0079g00600.t01	Wine grape	cytosol	68.88	72.13
EES10890	Sorghum	cytosol	71.23	71.65
GSMUA_Achr7P12330_001	Banana	cytosol	70.45	71.57
VIT_17s0000g00920.t01	Wine grape	cytosol	67.32	68.12
Zm00001d003522_P002	Maize	cytosol	66.73	67.13
HORVU2Hr1G078580.10	Barley	cytosol	57.14	53.38
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	19.18	18.25

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100261008	wikigene:100261008
Gene3D:3.40.640.10	Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	ProteinID:CCB50738	ProteinID:CCB50738.1	UniProt:F6HF89
EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	EntrezGene:LOC100261008	wikigene:LOC100261008	PFAM:PF00282
PANTHER:PTHR43321	PANTHER:PTHR43321:SF4	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TIGR:TC65955	TIGRFAMs:TIGR01788	UniParc:UPI0001982922	ArrayExpress:VIT_01s0011g06610	EnsemblPlantsGene:VIT_01s0011g06610	EnsemblPlants:VIT_01s0011g06610.t01
unigene:Vvi.14832	RefSeq:XP_002285268	RefSeq:XP_002285268.1	SEG:seg	:	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:F6HF89]

Coordinates

chr1:-:6440772..6443147

Molecular Weight (calculated)

57305.2 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.200

Length

511 amino acids

Sequence
(BLAST)

001: MVLSVVQGCE EESSSVVSSV FASRYVQDPP PRYKMPEKSI PKEAAYQIVH DELLLDGLPR LNLATFVTTW MEPECDKLMA EAINKNYVDM DEYPVTTELQ
101: NRCVNMIAKL FNAPSADQTK QAVGVGTVGS SEAMMLAGLA FKKKWQNKRK AQKKPFDKPN IVTGANVQVC WEKFARYFEV ELKEVKLREG YYVMDPVKAV
201: EMVDENTICV AAILGSTFNG EFEDVKLLNT LLTQKNKRTG WDTPIHVDAA SGGFVAPFLY PELEWDFRLP LVKSINVSGH KYGLVYAGVG WAIWRSKEEL
301: PEELIFHINY LGGDEPTFTL NFSKGSSQVI AQYYQFLRMG FEGYKKVMSN CMESARILRE GLEKTGRFQI ISKEKGVPVV AFAFKGNDRK NLAFGLSKAL
401: RNYGWIVPAY TMPANAENVT VLRVVVREDF GRQLVEKLLF HIGVALKEVT DAASSVPMIR LTVEMKADES EMNAGEGTLH IPAASVHWKH DKPETVDTQV
501: PIMDGKTKGV C

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.