Factsheet for VIT_17s0000g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P22810_001	Banana	cytosol	75.84	80.8
CDX92158	Canola	cytosol	43.76	79.78
KRH38971	Soybean	cytosol	78.42	79.52
KRH09492	Soybean	cytosol	78.42	79.36
VIT_04s0079g00600.t01	Wine grape	cytosol	76.24	78.89
CDY46883	Canola	cytosol	75.05	78.47
GSMUA_Achr7P02370_001	Banana	cytosol	77.23	78.16
HORVU2Hr1G078560.1	Barley	plastid	74.85	77.78
TraesCS2D01G313500.1	Wheat	plastid	74.65	77.57
Bra022241.1-P	Field mustard	cytosol	75.25	77.55
AT3G17760.1	Thale cress	cytosol	75.84	77.53
Os04t0447400-01	Rice	plasma membrane	74.26	77.48
CDY49834	Canola	cytosol	74.06	77.43
TraesCS2A01G315300.1	Wheat	plastid	74.46	77.37
Zm00001d003531_P002	Maize	plastid	74.85	77.3
PGSC0003DMT400079706	Potato	cytosol	76.83	77.29
EES12248	Sorghum	plastid	74.65	77.25
Bra021272.1-P	Field mustard	cytosol	75.05	77.03
Solyc03g098240.2.1	Tomato	plastid	76.44	76.89
VIT_01s0011g06600.t01	Wine grape	cytosol	75.05	76.57
TraesCS2B01G333700.1	Wheat	plastid	75.05	73.88
CDX95824	Canola	cytosol	30.3	69.23
AT3G17720.1	Thale cress	mitochondrion	26.34	68.56
VIT_01s0011g06610.t01	Wine grape	cytosol	68.12	67.32
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	19.6	18.44

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100265999	wikigene:100265999
Gene3D:3.40.640.10	Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	ProteinID:CCB60927	ProteinID:CCB60927.1	ncoils:Coil
UniProt:F6I1W0	EMBL:FN596517	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488
GO:GO:0005575	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
EntrezGene:LOC100265999	wikigene:LOC100265999	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF8	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGR:TC54345	TIGRFAMs:TIGR01788	UniParc:UPI0001985ABF
ArrayExpress:VIT_17s0000g00920	EnsemblPlantsGene:VIT_17s0000g00920	EnsemblPlants:VIT_17s0000g00920.t01	unigene:Vvi.8851	RefSeq:XP_002263081	RefSeq:XP_002263081.1
SEG:seg	:	:	:	:	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:F6I1W0]

Coordinates

chr17_random:+:616291..620745

Molecular Weight (calculated)

57129.5 Da

IEP (calculated)

5.430

GRAVY (calculated)

-0.247

Length

505 amino acids

Sequence
(BLAST)

001: MVISTTISDS SEHLHATFAS RYVRDPLPKF KMPERSIPKE AAFQIISDEL MLDGNPRLNL ASFVTTWMEE ECDKLIMASV NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PVGENETAIG VGTVGSSEAI MLAGLAFKRK WQQKRKSEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPVKAVEMVD
201: ENTICVAAIL GSTLTGEFED VKLLNELLTK KNTETGWGTP IHVDAASGGF IAPFLHPDLE WDFRLPLVKS INVSGHKYGL VYAGVGWVVW RTKDDLPEEL
301: IFHINYLGSD QPTFTLNFSK GSSQIIAQYY QFIRLGFEGY KNIMTNCMDN ANVLKQGLVE TGRFEIVSKD IGVPLVAFSL KDTSNYTVFD ISNNLRRYGW
401: IIPAYTMPPD AEHIAVLRVV VREDFSRSLA ERLLSDIEKV MREMDAVQSR ATTRATHVIA TVDETREGEG EGSEKLNKKT VMENREEIAM YWKRVVDRKK
501: TSGVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.