Factsheet for AT3G17760.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95824	Canola	cytosol	42.91	95.93
CDY46883	Canola	cytosol	93.12	95.24
Bra022241.1-P	Field mustard	cytosol	93.52	94.29
CDY49834	Canola	cytosol	92.11	94.2
Bra021272.1-P	Field mustard	cytosol	93.32	93.7
CDX92158	Canola	cytosol	50.0	89.17
KRH38971	Soybean	cytosol	78.95	78.31
GSMUA_Achr8P22810_001	Banana	cytosol	75.1	78.27
KRH09492	Soybean	cytosol	78.74	77.96
AT3G17720.1	Thale cress	mitochondrion	30.57	77.84
TraesCS2D01G313500.1	Wheat	plastid	75.71	76.95
TraesCS2A01G315300.1	Wheat	plastid	75.51	76.75
Os04t0447400-01	Rice	plasma membrane	74.9	76.45
EES12248	Sorghum	plastid	75.51	76.43
HORVU2Hr1G078560.1	Barley	plastid	74.7	75.93
VIT_17s0000g00920.t01	Wine grape	cytosol	77.53	75.84
Zm00001d003531_P002	Maize	plastid	74.9	75.66
AT5G17330.1	Thale cress	cytosol	75.51	74.3
AT1G65960.2	Thale cress	cytosol	74.29	74.29
GSMUA_Achr7P02370_001	Banana	cytosol	74.7	73.95
Solyc03g098240.2.1	Tomato	plastid	74.9	73.71
PGSC0003DMT400079706	Potato	cytosol	74.7	73.51
TraesCS2B01G333700.1	Wheat	plastid	76.11	73.29
AT2G02000.1	Thale cress	cytosol	73.48	72.6
AT2G02010.2	Thale cress	plastid	75.71	68.62
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	20.24	18.38

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:821044	UniProt:A0A178VFR2	ProteinID:AEE76003.1	ProteinID:AEE76004.1	ArrayExpress:AT3G17760
EnsemblPlantsGene:AT3G17760	RefSeq:AT3G17760	TAIR:AT3G17760	RefSeq:AT3G17760-TAIR-G	EnsemblPlants:AT3G17760.1	TAIR:AT3G17760.1
Unigene:At.38660	ProteinID:BAB02870.1	Symbol:GAD5	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	RefSeq:NP_001154621.1	RefSeq:NP_188403.1	ProteinID:OAP05159.1
PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF8	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase
UniProt:Q9LSH2	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI0000048733	:	:

Description

GAD5Glutamate decarboxylase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSH2]

Coordinates

chr3:-:6078727..6080895

Molecular Weight (calculated)

55773.0 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.145

Length

494 amino acids

Sequence
(BLAST)

001: MVLATNSDSD EHLHSTFASR YVRAVVPRFK MPDHCMPKDA AYQVINDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSVN KNYVDMDEYP VTTELQNRCV
101: NMIANLFHAP VGEDEAAIGC GTVGSSEAIM LAGLAFKRKW QHRRKAQGLP IDKPNIVTGA NVQVCWEKFA RYFEVELKEV KLSEDYYVMD PAKAVEMVDE
201: NTICVAAILG STLTGEFEDV KQLNDLLAEK NAETGWETPI HVDAASGGFI APFLYPDLEW DFRLPWVKSI NVSGHKYGLV YAGVGWVVWR TKDDLPEELV
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ FIRLGFEGYK NIMENCMDNA RRLREGIEMT GKFNIVSKDI GVPLVAFSLK DSSKHTVFEI AESLRKFGWI
401: IPAYTMPADA QHIAVLRVVI REDFSRGLAD RLITHIIQVL KEIEGLPSRI AHLAAAAAVS GDDEEVKVKT AKMSLEDITK YWKRLVEHKR NIVC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.