Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16935 | Canola | cytosol | 93.43 | 95.33 |
| Bra006397.1-P | Field mustard | cytosol | 95.22 | 95.22 |
| Bra008561.1-P | Field mustard | cytosol | 89.24 | 95.12 |
| CDY68511 | Canola | cytosol, mitochondrion | 76.29 | 94.57 |
| CDX78740 | Canola | cytosol | 75.3 | 93.56 |
| Bra006396.1-P | Field mustard | cytosol, plastid | 90.04 | 91.13 |
| CDX78739 | Canola | cytosol, plastid | 90.04 | 91.13 |
| CDY02710 | Canola | cytosol | 87.45 | 89.23 |
| Bra023612.1-P | Field mustard | cytosol | 83.86 | 89.19 |
| CDX85460 | Canola | cytosol | 81.87 | 87.82 |
| VIT_04s0079g00600.t01 | Wine grape | cytosol | 84.06 | 86.48 |
| VIT_01s0011g06600.t01 | Wine grape | cytosol | 84.66 | 85.86 |
| GSMUA_Achr8P30730_001 | Banana | cytosol | 80.88 | 85.65 |
| EER95206 | Sorghum | cytosol | 83.47 | 85.51 |
| TraesCS4B01G052300.1 | Wheat | cytosol | 84.06 | 85.25 |
| TraesCS4D01G052500.1 | Wheat | plastid | 84.06 | 85.25 |
| TraesCS4A01G262600.1 | Wheat | cytosol | 84.06 | 85.25 |
| TraesCS4A01G369200.1 | Wheat | cytosol | 77.09 | 85.24 |
| Os03t0236200-01 | Rice | plasma membrane | 83.47 | 85.16 |
| Zm00001d047981_P001 | Maize | cytosol | 83.07 | 85.1 |
| Os03t0720300-01 | Rice | plastid | 83.07 | 84.76 |
| KRH72934 | Soybean | cytosol | 84.86 | 84.69 |
| EER93555 | Sorghum | cytosol | 83.07 | 84.58 |
| Zm00001d033805_P001 | Maize | cytosol, extracellular | 83.07 | 84.58 |
| KRH17286 | Soybean | cytosol | 84.46 | 84.29 |
| KRG97998 | Soybean | endoplasmic reticulum | 83.67 | 83.5 |
| GSMUA_Achr4P31270_001 | Banana | cytosol | 80.68 | 82.82 |
| KRH30893 | Soybean | endoplasmic reticulum | 66.93 | 82.35 |
| AT1G65960.2 | Thale cress | cytosol | 80.68 | 81.98 |
| TraesCS4B01G231400.1 | Wheat | cytosol | 81.27 | 81.6 |
| TraesCS4A01G075600.1 | Wheat | cytosol | 80.48 | 80.8 |
| AT2G02000.1 | Thale cress | cytosol | 78.88 | 79.2 |
| TraesCS4D01G232700.1 | Wheat | cytosol | 81.67 | 77.65 |
| AT2G02010.2 | Thale cress | plastid | 82.07 | 75.6 |
| AT3G17760.1 | Thale cress | cytosol | 74.3 | 75.51 |
| CDX70751 | Canola | cytosol, plastid | 92.43 | 72.27 |
| AT3G17720.1 | Thale cress | mitochondrion | 26.1 | 67.53 |
| Os05t0421750-00 | Rice | mitochondrion | 20.12 | 38.7 |
| AT1G27980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane, plastid | 19.52 | 18.01 |
Protein Annotations
| KEGG:00250+4.1.1.15 | KEGG:00410+4.1.1.15 | KEGG:00430+4.1.1.15 | KEGG:00650+4.1.1.15 | Gene3D:3.40.640.10 | Gene3D:3.90.1150.160 |
| PDB:3HBX | MapMan:4.1.1.1.3.1 | EntrezGene:831599 | ProteinID:AED92414.1 | ArrayExpress:AT5G17330 | EnsemblPlantsGene:AT5G17330 |
| RefSeq:AT5G17330 | TAIR:AT5G17330 | RefSeq:AT5G17330-TAIR-G | EnsemblPlants:AT5G17330.1 | TAIR:AT5G17330.1 | EMBL:AY094464 |
| Unigene:At.25228 | ProteinID:BAB10520.1 | EMBL:BT001047 | Symbol:GAD | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004351 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006536 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016829 | GO:GO:0016831 | GO:GO:0019752 | GO:GO:0030170 | GO:GO:0046686 |
| InterPro:Glutamate_decarboxylase | InterPro:IPR015421 | RefSeq:NP_197235.1 | PFAM:PF00282 | PO:PO:0000005 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001185 | PO:PO:0007095 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR43321 | PANTHER:PTHR43321:SF9 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_major | InterPro:PyrdxlP-dep_de-COase | UniProt:Q42521 |
| SUPFAM:SSF53383 | TIGRFAMs:TIGR01788 | EMBL:U10034 | UniParc:UPI0000001AFC | : | : |
Description
GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
Coordinates
chr5:+:5710910..5715075
Molecular Weight (calculated)
57069.5 Da
IEP (calculated)
5.211
GRAVY (calculated)
-0.254
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.