CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006396.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY16935	Canola	cytosol	91.53	92.28
CDY68511	Canola	cytosol, mitochondrion	74.19	90.86
AT5G17330.1	Thale cress	cytosol	91.13	90.04
CDX78740	Canola	cytosol	73.19	89.85
CDY02710	Canola	cytosol	86.69	87.4
CDX85460	Canola	cytosol	80.85	85.68
CDY15807	Canola	cytosol	83.67	84.18
GSMUA_Achr8P30730_001	Banana	cytosol	80.44	84.18
VIT_04s0079g00600.t01	Wine grape	cytosol	82.66	84.02
CDY09396	Canola	cytosol	83.27	83.77
VIT_01s0011g06600.t01	Wine grape	cytosol	83.47	83.64
CDY04111	Canola	cytosol	82.26	82.76
CDY56295	Canola	cytosol	81.85	82.19
KRH72934	Soybean	cytosol	82.86	81.71
KRH17286	Soybean	cytosol	82.66	81.51
KRG97998	Soybean	endoplasmic reticulum	82.46	81.31
CDY07474	Canola	cytosol	80.85	81.17
CDY39258	Canola	cytosol	80.44	80.77
GSMUA_Achr4P31270_001	Banana	cytosol	79.23	80.37
CDY28614	Canola	cytosol	63.51	80.36
KRH30893	Soybean	endoplasmic reticulum	65.73	79.9
CDY12173	Canola	cytosol	55.65	79.77
CDX92158	Canola	cytosol	43.95	78.7
CDX70758	Canola	cytosol	17.94	75.42
CDX70751	Canola	cytosol, plastid	96.98	74.92
CDY46883	Canola	cytosol	72.58	74.53
CDY49834	Canola	cytosol	71.77	73.71
CDX78742	Canola	cytosol	14.11	73.68
CDX78746	Canola	cytosol	21.57	69.93
CDY71197	Canola	cytosol	14.31	68.27
CDX87977	Canola	cytosol	30.04	65.35
CDY12174	Canola	cytosol	15.32	62.81
CDX95824	Canola	cytosol	27.82	62.44
CDX87975	Canola	cytosol	11.09	53.92
CDY11756	Canola	plastid	19.56	17.83
CDX90118	Canola	plastid	19.56	17.83
CDY48416	Canola	cytosol	7.66	16.38
CDY48414	Canola	cytosol	7.66	16.38

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078CRR1	EnsemblPlants:CDX78739	ProteinID:CDX78739	ProteinID:CDX78739.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00130170001	InterPro:Glutamate_decarboxylase
InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF7	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI000253FD79	SEG:seg

Description

BnaA03g06510D

Coordinates

chrLK031815:+:2018604..2020899

Molecular Weight (calculated)

56215.6 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.200

Length

496 amino acids

Sequence
(BLAST)

001: MVLSHAASDS DVSVHSTFAS RYVRTSLPRF RMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMASI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGETETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPEQAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVL KNKETGLDIP IHVDAASGGF IAPFLYPELE WDFRLPQVKS INVSGHKYGL VYAGIGWVVW RNKEDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TGRFSIVSKD EGIPLVAFSL KDNSSHTEFE ISEMLRRYGW
401: IVPAYTMPAN AEHITVLRVV IREDFSRTLA ERLVMDIEKV MHELDELPSR VIHKISLGEV KSEDNGDNMV VTVKKSDIEK PIEIINVKKS DKPIFC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.