CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017429.1-P	Field mustard	cytosol	100.0	100.0
CDY56295	Canola	cytosol	98.38	98.18
CDY15807	Canola	cytosol	96.55	96.55
CDY09396	Canola	cytosol	96.15	96.15
AT2G02000.1	Thale cress	cytosol	90.26	89.0
GSMUA_Achr8P30730_001	Banana	cytosol	83.37	86.71
VIT_01s0011g06600.t01	Wine grape	cytosol	87.02	86.67
Solyc04g025530.2.1	Tomato	plastid	86.21	86.21
VIT_04s0079g00600.t01	Wine grape	cytosol	84.58	85.45
AT2G02010.2	Thale cress	plastid	94.32	85.32
CDY16935	Canola	cytosol	84.58	84.76
PGSC0003DMT400058594	Potato	cytosol	84.79	84.1
Solyc01g005000.2.1	Tomato	cytosol	82.15	83.68
CDX78740	Canola	cytosol	68.15	83.17
CDX78739	Canola	cytosol, plastid	82.76	82.26
CDY07474	Canola	cytosol	82.35	82.19
CDY28614	Canola	cytosol	65.31	82.14
CDY39258	Canola	cytosol	81.95	81.78
CDY68511	Canola	cytosol, mitochondrion	67.14	81.73
GSMUA_Achr4P31270_001	Banana	cytosol	80.53	81.19
CDY02710	Canola	cytosol	80.12	80.28
CDY12173	Canola	cytosol	56.19	80.06
CDX92158	Canola	cytosol	44.22	78.7
CDX85460	Canola	cytosol	74.24	78.21
CDY46883	Canola	cytosol	74.24	75.78
CDY49834	Canola	cytosol	73.63	75.16
PGSC0003DMT400003251	Potato	cytosol	22.52	72.55
CDY71197	Canola	cytosol	14.2	67.31
CDX87977	Canola	cytosol	30.63	66.23
CDX70751	Canola	cytosol, plastid	84.38	64.8
CDX95824	Canola	cytosol	29.01	64.71
CDY12174	Canola	cytosol	15.42	62.81
CDX70758	Canola	cytosol	14.2	59.32
CDX87975	Canola	cytosol	11.97	57.84
CDX78746	Canola	cytosol	17.04	54.9
CDX78742	Canola	cytosol	10.34	53.68
CDY11756	Canola	plastid	19.47	17.65
CDX90118	Canola	plastid	19.47	17.65
CDY48416	Canola	cytosol	7.1	15.09
CDY48414	Canola	cytosol	7.1	15.09

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078ESA2	EnsemblPlants:CDY04111	ProteinID:CDY04111	ProteinID:CDY04111.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00117762001
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2	MetaCyc:PWY-4321
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00025422D0
SEG:seg	:	:	:	:	:

Description

BnaA09g18890D

Coordinates

chrLK031949:-:208865..212330

Molecular Weight (calculated)

55990.3 Da

IEP (calculated)

5.612

GRAVY (calculated)

-0.268

Length

493 amino acids

Sequence
(BLAST)

001: MVLSKTASET DASIHSTFAS RYVRISLPRF EMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMESI NKNYVDMDEY PVTTELQNRC
101: VNMIARLFNA PLDDGEAAVG VGTVGSSEAI MLAGLAFKRQ WQNKRKAQGL PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLTGEFED VKLLNDLLVE KNKLTGWNTG IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RTKSDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY RNVMDNCREN MMVLREGLEK TGRFNIVSKE NGVPLVAFSL KDNSRHDEFE VAETLRRFGW
401: IVPAYTMPAD AEHVTVLRVV IREDFSRTLA ERLVADFEKV LRELDTLPAK VHAKMANGKA KGVKKTEEET TREVTAYWKK FVETKKTNKN KIC

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.