Factsheet for PGSC0003DMT400003251

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g025530.2.1	Tomato	plastid	95.42	29.61
PGSC0003DMT400058594	Potato	cytosol	87.58	26.96
Bra026621.1-P	Field mustard	cytosol	73.86	22.92
CDY09396	Canola	cytosol	73.86	22.92
CDY15807	Canola	cytosol	73.86	22.92
Bra017429.1-P	Field mustard	cytosol	72.55	22.52
CDY04111	Canola	cytosol	72.55	22.52
AT2G02000.1	Thale cress	cytosol	72.55	22.2
CDY56295	Canola	cytosol	70.59	21.86
PGSC0003DMT400034693	Potato	cytosol	71.24	21.71
GSMUA_Achr8P30730_001	Banana	cytosol	65.36	21.1
GSMUA_Achr4P31270_001	Banana	cytosol	66.01	20.65
AT2G02010.2	Thale cress	plastid	71.24	20.0
PGSC0003DMT400079706	Potato	cytosol	55.56	16.93
PGSC0003DMT400006326	Potato	cytosol	7.19	7.69
PGSC0003DMT400051021	Potato	plastid	12.42	3.48

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:102596221	Gene3D:3.90.1150.160
MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030170	InterPro:Glutamate_decarboxylase	UniProt:M0ZLB2
EnsemblPlantsGene:PGSC0003DMG400001287	PGSC:PGSC0003DMG400001287	EnsemblPlants:PGSC0003DMT400003251	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2	InterPro:PyrdxlP-dep_Trfase
SUPFAM:SSF53383	UniParc:UPI000294ED4B	RefSeq:XP_006368084.1	:	:	:

Description

Glutamate decarboxylase isozyme 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400001287]

Coordinates

chr00:-:40896704..40897510

Molecular Weight (calculated)

17575.3 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.212

Length

153 amino acids

Sequence
(BLAST)

001: MENCRENAIM LREGLEKTGR FNIVSKDEGV PLVAFSLKDN SLHNEFEVSE TLRRFGWIVP AYTMPADAQH VTVLRVVIRE DFSRTLAERL VFDIVKVLHE
101: LDTLPARLSA KMEEVGEENL VIKNNGKKTE IEVQREVTDF WKKFVLARKA AVC

Best Arabidopsis Sequence Match ( AT1G65960.1 )
(BLAST)

001: MLAGLAFKRK WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VNLSEGYYVM DPDKAAEMVD ENTICVAAIL GSTLNGEFED VKRLNDLLVK
101: KNEETGWNTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RAAEDLPEEL IFHINYLGAD QPTFTLNFSK GSSQIIAQYY
201: QLIRLGFEGY KNVMENCIEN MVVLKEGIEK TERFNIVSKD QGVPVVAFSL KDHSFHNEFE ISEMLRRFGW IVPAYTMPAD AQHITVLRVV IREDFSRTLA
301: ERLVADISKV LHELDTLPSK ISKKMGIEGI AENVKEKKME KEILMEVIVG WRKFVKERKK MNGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.