Factsheet for PGSC0003DMT400034693

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011920.1.1	Tomato	plastid	97.01	96.82
GSMUA_Achr8P30730_001	Banana	cytosol	82.87	87.76
TraesCS4A01G262600.1	Wheat	cytosol	84.06	85.25
TraesCS4B01G052300.1	Wheat	cytosol	84.06	85.25
TraesCS4D01G052500.1	Wheat	plastid	84.06	85.25
Zm00001d047981_P001	Maize	cytosol	82.87	84.9
HORVU4Hr1G008700.1	Barley	cytosol	83.47	84.65
EER93555	Sorghum	cytosol	83.07	84.58
Os03t0720300-01	Rice	plastid	82.87	84.55
EER95206	Sorghum	cytosol	82.47	84.49
Zm00001d033805_P001	Maize	cytosol, extracellular	82.87	84.38
PGSC0003DMT400058594	Potato	cytosol	83.27	84.1
Os03t0236200-01	Rice	plasma membrane	82.27	83.94
TraesCS4A01G369200.1	Wheat	cytosol	75.7	83.7
GSMUA_Achr4P31270_001	Banana	cytosol	81.08	83.23
TraesCS4B01G231400.1	Wheat	cytosol	81.08	81.4
HORVU4Hr1G064790.6	Barley	cytosol	80.28	81.09
TraesCS4A01G075600.1	Wheat	cytosol	80.68	81.0
TraesCS4D01G232700.1	Wheat	cytosol	81.47	77.46
PGSC0003DMT400006326	Potato	cytosol	21.51	75.52
PGSC0003DMT400079706	Potato	cytosol	75.3	75.3
PGSC0003DMT400003251	Potato	cytosol	21.71	71.24
CDX70758	Canola	cytosol	14.94	63.56
CDX78746	Canola	cytosol	16.93	55.56
Bra006404.1-P	Field mustard	cytosol	16.93	55.56
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.36	54.74
CDX78742	Canola	cytosol	10.36	54.74
Os05t0421750-00	Rice	mitochondrion	19.72	37.93
PGSC0003DMT400051021	Potato	plastid	18.33	16.85

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:102578660	Gene3D:3.40.640.10
Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488
GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	UniProt:M1B144	PFAM:PF00282
EnsemblPlantsGene:PGSC0003DMG400013331	PGSC:PGSC0003DMG400013331	EnsemblPlants:PGSC0003DMT400034693	PANTHER:PTHR43321	PANTHER:PTHR43321:SF7	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00029560B4	RefSeq:XP_006352388.1
SEG:seg	:	:	:	:	:

Description

Glutamate decarboxylase isoform2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013331]

Coordinates

chr11:+:848059..855041

Molecular Weight (calculated)

56899.3 Da

IEP (calculated)

5.700

GRAVY (calculated)

-0.295

Length

502 amino acids

Sequence
(BLAST)

001: MVLSKIASES DMSIHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMDSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEDKETAVG VGTVGSSEAI MLAGLAFKRK WQNKMKAQGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLTDGYYVM NPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKKLNDLLIE KNKETGWDTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKDDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY KNVMENCQEN ARVLREGLEK TGRFDIVSKE VGVPLVAFSL KDNSKHDEFE ISETLRRFGW
401: IVPAYTMPPD AQHITVLRVV IREDFSRTLA ERLVMDIAKV LHELDMLPAR VKAKLAMAEE AAAANGSDSA SHHKTDREWE LEVTEAWKKF VANKKKKTKG
501: VC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.