Factsheet for HORVU4Hr1G064790.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G231400.1	Wheat	cytosol	96.38	95.8
TraesCS4A01G075600.1	Wheat	cytosol	94.97	94.4
TraesCS4A01G369200.1	Wheat	cytosol	85.71	93.83
EER95206	Sorghum	cytosol	89.94	91.22
TraesCS4D01G232700.1	Wheat	cytosol	96.78	91.1
Os03t0236200-01	Rice	plasma membrane	89.94	90.85
Zm00001d047981_P001	Maize	cytosol	89.13	90.41
GSMUA_Achr8P30730_001	Banana	cytosol	82.5	86.5
VIT_04s0079g00600.t01	Wine grape	cytosol	83.3	84.84
VIT_01s0011g06600.t01	Wine grape	cytosol	84.1	84.44
HORVU4Hr1G008700.1	Barley	cytosol	83.7	84.04
GSMUA_Achr4P31270_001	Banana	cytosol	81.49	82.82
Solyc11g011920.1.1	Tomato	plastid	81.69	80.72
Solyc05g054050.2.1	Tomato	plastid	80.68	80.68
PGSC0003DMT400034693	Potato	cytosol	81.09	80.28
HORVU2Hr1G078560.1	Barley	plastid	75.65	77.37
HORVU3Hr1G003050.7	Barley	cytosol	72.23	73.27
HORVU3Hr1G112860.1	Barley	cytosol	72.43	72.43
CDX70758	Canola	cytosol	14.69	61.86
CDX78746	Canola	cytosol	17.1	55.56
Bra006404.1-P	Field mustard	cytosol	17.1	55.56
HORVU2Hr1G078580.10	Barley	cytosol	55.94	50.82
Bra006399.1-P	Field mustard	cytosol, mitochondrion	9.05	47.37
CDX78742	Canola	cytosol	9.05	47.37
HORVU7Hr1G081730.1	Barley	peroxisome	17.3	41.95
HORVU3Hr1G015150.11	Barley	cytosol	19.32	17.81

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	UniProt:A0A287PDD9	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488
GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	EnsemblPlantsGene:HORVU4Hr1G064790	EnsemblPlants:HORVU4Hr1G064790.6	InterPro:IPR015421
PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase
SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI000B47439F	SEG:seg	:	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:A0A287PDD9]

Coordinates

chrchr4H:-:542168351..542170559

Molecular Weight (calculated)

56235.5 Da

IEP (calculated)

5.404

GRAVY (calculated)

-0.230

Length

497 amino acids

Sequence
(BLAST)

001: MVLSRAASDT DVSVHSTFAS RYVRSSLPRY RMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMASI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFHA PLGESETAVG VGTVGSSEAI MLAGLAFKRR WQNKRKAEGK PFDKPNIITG ANVQQVCWEK FARYFEVELK EVKLREGYYV MDPEQAVEMV
201: DENTICVAAI LGSTLNGEFE DVKRINDLLE DKNKQTGWET PIHVDAASGG FIAPFLYPEL EWDFRLPWVK SINVSGHKYG LVYPGIGWCV WRSKEDLPDE
301: LIFHINYLGT DQPTFTLNFS KGSSQVIAQY YQLIRHGFEG YRNIMENCQE NAMVVKEGLE KTGRFNIVSK DEGVPLVAFS LKDHSRHDEF EISDMLRRFG
401: WIVPAYTMPA DAQHVTVLRV VIREEFSRTL AERLVIDIDT VMAQLDVLPS KLTPPALGLL PATLPKTVAK KTELETQKSV AAAWKEFVLA KKTNGVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.