Factsheet for VIT_01s0011g06600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30730_001	Banana	cytosol	87.07	90.93
VIT_04s0079g00600.t01	Wine grape	cytosol	88.48	89.75
CDY15807	Canola	cytosol	87.27	87.63
CDY09396	Canola	cytosol	86.87	87.22
Bra026621.1-P	Field mustard	cytosol	86.87	87.22
EER95206	Sorghum	cytosol	86.26	87.14
CDY04111	Canola	cytosol	86.67	87.02
Bra017429.1-P	Field mustard	cytosol	86.67	87.02
Zm00001d047981_P001	Maize	cytosol	86.06	86.94
Solyc04g025530.2.1	Tomato	plastid	86.46	86.82
CDY56295	Canola	cytosol	86.06	86.23
CDY16935	Canola	cytosol	85.66	86.18
Os03t0236200-01	Rice	plasma membrane	85.45	85.98
KRH72934	Soybean	cytosol	87.27	85.88
Solyc11g011920.1.1	Tomato	plastid	87.27	85.88
TraesCS4A01G369200.1	Wheat	cytosol	78.59	85.68
KRG97998	Soybean	endoplasmic reticulum	86.87	85.49
Bra008561.1-P	Field mustard	cytosol	81.21	85.35
KRH17286	Soybean	cytosol	86.67	85.29
Bra006397.1-P	Field mustard	cytosol	86.46	85.26
GSMUA_Achr4P31270_001	Banana	cytosol	84.04	85.07
EER93555	Sorghum	cytosol	84.65	84.99
Os03t0720300-01	Rice	plastid	84.24	84.76
AT5G17330.1	Thale cress	cytosol	85.86	84.66
Solyc05g054050.2.1	Tomato	plastid	84.85	84.51
KRH30893	Soybean	endoplasmic reticulum	69.49	84.31
TraesCS4A01G262600.1	Wheat	cytosol	84.24	84.24
TraesCS4B01G052300.1	Wheat	cytosol	84.24	84.24
TraesCS4D01G052500.1	Wheat	plastid	84.24	84.24
CDY68511	Canola	cytosol, mitochondrion	68.89	84.2
CDX78740	Canola	cytosol	68.69	84.16
HORVU4Hr1G064790.6	Barley	cytosol	84.44	84.1
Solyc01g005000.2.1	Tomato	cytosol	82.22	84.09
HORVU4Hr1G008700.1	Barley	cytosol	84.04	84.04
Zm00001d033805_P001	Maize	cytosol, extracellular	83.23	83.57
Bra006396.1-P	Field mustard	cytosol, plastid	83.64	83.47
CDX78739	Canola	cytosol, plastid	83.64	83.47
TraesCS4B01G231400.1	Wheat	cytosol	84.24	83.4
AT2G02000.1	Thale cress	cytosol	83.64	82.8
TraesCS4A01G075600.1	Wheat	cytosol	83.43	82.6
AT1G65960.2	Thale cress	cytosol	81.41	81.58
Bra023612.1-P	Field mustard	cytosol	77.58	81.36
CDY02710	Canola	cytosol	80.81	81.3
CDY28614	Canola	cytosol	63.84	80.61
CDY07474	Canola	cytosol	80.2	80.36
Bra004137.1-P	Field mustard	cytosol	63.64	80.36
Bra021090.1-P	Field mustard	cytosol	79.8	79.96
CDY39258	Canola	cytosol	79.8	79.96
CDY12173	Canola	cytosol	55.76	79.77
CDX85460	Canola	cytosol	75.35	79.7
TraesCS4D01G232700.1	Wheat	cytosol	84.85	79.55
AT2G02010.2	Thale cress	plastid	86.06	78.17
PGSC0003DMT400006326	Potato	cytosol	22.42	77.62
VIT_17s0000g00920.t01	Wine grape	cytosol	76.57	75.05
KRH58569	Soybean	cytosol	73.94	74.24
KRH42468	Soybean	cytosol	73.94	74.24
KRH42467	Soybean	nucleus	73.74	74.04
KRH42466	Soybean	cytosol	67.27	70.7
VIT_01s0011g06610.t01	Wine grape	cytosol	72.73	70.45
CDY71197	Canola	cytosol	13.94	66.35
CDX70751	Canola	cytosol, plastid	84.85	65.42
CDY12174	Canola	cytosol	15.56	63.64
CDX70758	Canola	cytosol	14.75	61.86
CDX87975	Canola	cytosol	12.73	61.76
Bra006404.1-P	Field mustard	cytosol	16.97	54.9
CDX78746	Canola	cytosol	16.97	54.9
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.51	54.74
CDX78742	Canola	cytosol	10.51	54.74
HORVU7Hr1G081730.1	Barley	peroxisome	16.57	40.0
Os05t0421750-00	Rice	mitochondrion	20.61	39.08
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	21.41	19.74

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100266215	wikigene:100266215
Gene3D:3.40.640.10	Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	EMBL:AM460203	ProteinID:CAN67952	ProteinID:CAN67952.1
ProteinID:CCB50739	ProteinID:CCB50739.1	UniProt:F6HF90	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
EntrezGene:LOC100266215	wikigene:LOC100266215	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00015C8F4B	ArrayExpress:VIT_01s0011g06600
EnsemblPlantsGene:VIT_01s0011g06600	EnsemblPlants:VIT_01s0011g06600.t01	RefSeq:XP_002285267	RefSeq:XP_002285267.1	:	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:F6HF90]

Coordinates

chr1:-:6433473..6435948

Molecular Weight (calculated)

55927.3 Da

IEP (calculated)

5.428

GRAVY (calculated)

-0.202

Length

495 amino acids

Sequence
(BLAST)

001: MVLSKTASES DVSVHSTFAS RYVKASLPRF KLPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMAAI NKNYVDMDEY PVTTELQNRC
101: VNIIAHLFNA PLEDSEAAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLRDGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKQTGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RSKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY RNVMENCQEN AMALKEGLEK TGRFNIISKD NGVPLVAFSL KDNSCHDEFE VADMLRRFGW
401: IVPAYTMPPD AQHVTVLRVV VREDFSRTLA ERLVFDITKV LHELDMLPAK LSAKISVEEK KQNGTILKKS VIETQREITD AWKKFVMAKK TNGVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.