CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78740	Canola	cytosol	79.88	97.28
CDY68511	Canola	cytosol, mitochondrion	79.88	97.04
AT5G17330.1	Thale cress	cytosol	95.33	93.43
CDY02710	Canola	cytosol	92.28	92.28
CDX78739	Canola	cytosol, plastid	92.28	91.53
CDX85460	Canola	cytosol	85.57	89.96
VIT_04s0079g00600.t01	Wine grape	cytosol	85.98	86.68
GSMUA_Achr8P30730_001	Banana	cytosol	83.33	86.5
CDY15807	Canola	cytosol	85.98	85.8
VIT_01s0011g06600.t01	Wine grape	cytosol	86.18	85.66
CDY09396	Canola	cytosol	85.77	85.6
CDY04111	Canola	cytosol	84.76	84.58
KRH72934	Soybean	cytosol	86.18	84.29
CDY56295	Canola	cytosol	84.55	84.21
CDX78742	Canola	cytosol	16.26	84.21
CDY07474	Canola	cytosol	84.35	84.01
KRH17286	Soybean	cytosol	85.77	83.9
KRG97998	Soybean	endoplasmic reticulum	85.77	83.9
CDY12173	Canola	cytosol	58.94	83.81
CDY39258	Canola	cytosol	83.94	83.6
GSMUA_Achr4P31270_001	Banana	cytosol	82.93	83.44
CDY28614	Canola	cytosol	66.26	83.16
KRH30893	Soybean	endoplasmic reticulum	68.7	82.84
CDX92158	Canola	cytosol	44.92	79.78
CDY46883	Canola	cytosol	74.8	76.19
CDX70758	Canola	cytosol	18.09	75.42
CDY49834	Canola	cytosol	73.98	75.36
CDX78746	Canola	cytosol	23.17	74.51
CDX70751	Canola	cytosol, plastid	95.53	73.21
CDY71197	Canola	cytosol	14.63	69.23
CDX87977	Canola	cytosol	30.69	66.23
CDX87975	Canola	cytosol	13.41	64.71
CDY12174	Canola	cytosol	15.65	63.64
CDX95824	Canola	cytosol	28.46	63.35
CDY11756	Canola	plastid	19.92	18.01
CDX90118	Canola	plastid	19.92	18.01
CDY48416	Canola	cytosol	7.93	16.81
CDY48414	Canola	cytosol	7.93	16.81

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078FR24	UniProt:A0A078FR24	EnsemblPlants:CDY16935	ProteinID:CDY16935	ProteinID:CDY16935.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00094857001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9
MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0004EDE168	:	:	:	:	:

Description

BnaC09g40620DGlutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:A0A078FR24]

Coordinates

chrLK032068:-:444323..448147

Molecular Weight (calculated)

55853.0 Da

IEP (calculated)

5.426

GRAVY (calculated)

-0.270

Length

492 amino acids

Sequence
(BLAST)

001: MVLSHAASDS DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGETETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVI KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MVVLREGLEK TGRFNIVSKD EGVPLVAFSL KDSSSHTEFE ISDMIRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR KSEANGDNLM VTVKKSDMEK QREVINGWKK FVSDRKKTNG IC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.