CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78739	Canola	cytosol, plastid	74.92	96.98
CDY16935	Canola	cytosol	73.21	95.53
CDY68511	Canola	cytosol, mitochondrion	59.66	94.57
CDX78740	Canola	cytosol	59.35	94.31
AT5G17330.1	Thale cress	cytosol	72.27	92.43
CDY02710	Canola	cytosol	68.85	89.84
CDX78742	Canola	cytosol	13.08	88.42
CDX85460	Canola	cytosol	64.17	88.03
CDY15807	Canola	cytosol	65.89	85.8
VIT_04s0079g00600.t01	Wine grape	cytosol	64.95	85.45
GSMUA_Achr8P30730_001	Banana	cytosol	63.08	85.44
CDY09396	Canola	cytosol	65.58	85.4
VIT_01s0011g06600.t01	Wine grape	cytosol	65.42	84.85
CDY04111	Canola	cytosol	64.8	84.38
CDY56295	Canola	cytosol	64.33	83.6
KRG97998	Soybean	endoplasmic reticulum	65.42	83.5
CDY07474	Canola	cytosol	64.02	83.2
KRH72934	Soybean	cytosol	65.11	83.1
CDY28614	Canola	cytosol	50.62	82.91
CDY39258	Canola	cytosol	63.71	82.79
KRH17286	Soybean	cytosol	64.8	82.7
CDY12173	Canola	cytosol	44.55	82.66
KRH30893	Soybean	endoplasmic reticulum	52.18	82.11
GSMUA_Achr4P31270_001	Banana	cytosol	62.46	82.0
CDX92158	Canola	cytosol	34.11	79.06
CDY46883	Canola	cytosol	56.85	75.57
CDY49834	Canola	cytosol	56.23	74.74
CDX70758	Canola	cytosol	13.71	74.58
CDX78746	Canola	cytosol	17.76	74.51
CDY71197	Canola	cytosol	11.21	69.23
CDX87977	Canola	cytosol	23.05	64.91
CDX95824	Canola	cytosol	22.12	64.25
CDY12174	Canola	cytosol	11.99	63.64
CDX87975	Canola	cytosol	9.81	61.76
CDY11756	Canola	plastid	15.26	18.01
CDX90118	Canola	plastid	15.26	18.01
CDY48416	Canola	cytosol	6.07	16.81
CDY48414	Canola	cytosol	6.07	16.81

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078C198	EnsemblPlants:CDX70751	ProteinID:CDX70751	ProteinID:CDX70751.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00140626001	InterPro:Glutamate_decarboxylase
InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI0004EE6504	SEG:seg

Description

BnaC03g08350D

Coordinates

chrLK031791:+:1866969..1870782

Molecular Weight (calculated)

73282.1 Da

IEP (calculated)

5.674

GRAVY (calculated)

-0.285

Length

642 amino acids

Sequence
(BLAST)

001: MVLSHAASDS DVSVHSTFAS RYVRTSLPRF RMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMASI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGETETAVG VGTVGSSEAI MLAGLAFKRK WQNKRRAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPEQAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVL KNKETGLDIP IHVDAASGGF IAPFLYPELE WDFRLPQVKS INVSGHKYGL VYAGIGWVVW RNKEDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TGRFSIVSKD EGIPLVAFSL KDNSSHTEFE ISEMLRRYGW
401: IVPAYTMPAN AEHITVLRVV IREDFSRTLA ERLVMDIEKV MHELDELPSR VIHKISLGEK WVGHEHQSDT GSSQVIAQYY QLIRLGHEGY RNVMENCREN
501: MIVLREGLEK TGRFNIVSKD EGVPLVAFSL KDSSSHTEFE ISDMLRRYGW IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR
601: KSEANGDNLM VTVKKTDMEK QREIINGWKK FVSDRKKTNG IC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.