CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28614	Canola	cytosol	97.4	85.97
CDY68511	Canola	cytosol, mitochondrion	84.68	72.35
CDX78740	Canola	cytosol	83.53	71.53
CDX87975	Canola	cytosol	19.65	66.67
CDY07474	Canola	cytosol	93.64	65.59
CDY39258	Canola	cytosol	93.35	65.38
CDX87977	Canola	cytosol	41.91	63.6
CDX70758	Canola	cytosol	20.23	59.32
CDY16935	Canola	cytosol	83.81	58.94
CDY02710	Canola	cytosol	81.79	57.52
CDX78742	Canola	cytosol	15.61	56.84
VIT_04s0079g00600.t01	Wine grape	cytosol	80.06	56.76
GSMUA_Achr8P30730_001	Banana	cytosol	77.17	56.33
CDY04111	Canola	cytosol	80.06	56.19
CDY15807	Canola	cytosol	80.06	56.19
CDY09396	Canola	cytosol	79.48	55.78
VIT_01s0011g06600.t01	Wine grape	cytosol	79.77	55.76
CDX78739	Canola	cytosol, plastid	79.77	55.65
CDX78746	Canola	cytosol	24.57	55.56
CDY56295	Canola	cytosol	78.61	55.06
CDX85460	Canola	cytosol	74.28	54.91
GSMUA_Achr4P31270_001	Banana	cytosol	75.72	53.58
CDX95824	Canola	cytosol	32.95	51.58
CDY46883	Canola	cytosol	71.97	51.55
CDY49834	Canola	cytosol	70.52	50.52
CDX92158	Canola	cytosol	36.42	45.49
CDX70751	Canola	cytosol, plastid	82.66	44.55
CDX90118	Canola	plastid	19.94	12.68
CDY11756	Canola	plastid	19.94	12.68
CDY48416	Canola	cytosol	7.8	11.64
CDY48414	Canola	cytosol	7.8	11.64
CDY71197	Canola	cytosol	0.58	1.92
CDY12174	Canola	cytosol	0.58	1.65

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:35.1	GO:A0A078FJ73	UniProt:A0A078FJ73	EnsemblPlants:CDY12173	ProteinID:CDY12173	ProteinID:CDY12173.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00061179001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	UniParc:UPI0004EEDF85	:

Description

BnaC04g12030DBnaC04g12030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ73]

Coordinates

chrLK032018:-:142553..144153

Molecular Weight (calculated)

39121.7 Da

IEP (calculated)

9.245

GRAVY (calculated)

-0.146

Length

346 amino acids

Sequence
(BLAST)

001: MIAHLFNAPL GETETAVGVG TVGSSEAIML AGLAFKRKWQ NKRKAEGKPF DKPNIVTGAN VQVCWEKFAR YFELSEGYYV MDPEKAVEMV DENTICVAAI
101: LGSTLTGEFE DVKRLNHLLV KKNDATGWNT PIHVDAASGG FIAPFIYPEL EWDFRLPLVK SINPTFTLNF SKGSSQIIAQ YYQLIRLGFE GYKNVMQNCR
201: ENMLVLKEGI EKTERFNIVS KDVGVPLVAF SLKGQSFHSE FEISEMLRRF GWIVPAYTMP ADAQHITVLR VVIREDFSRT LAERLVADIL KVLHELDTLP
301: SKISRKMGAE DFGNVKGKKV KREKLMEVIV GWRKFVKDRK KMNGVC

Best Arabidopsis Sequence Match ( AT1G65960.1 )
(BLAST)

001: MLAGLAFKRK WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VNLSEGYYVM DPDKAAEMVD ENTICVAAIL GSTLNGEFED VKRLNDLLVK
101: KNEETGWNTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RAAEDLPEEL IFHINYLGAD QPTFTLNFSK GSSQIIAQYY
201: QLIRLGFEGY KNVMENCIEN MVVLKEGIEK TERFNIVSKD QGVPVVAFSL KDHSFHNEFE ISEMLRRFGW IVPAYTMPAD AQHITVLRVV IREDFSRTLA
301: ERLVADISKV LHELDTLPSK ISKKMGIEGI AENVKEKKME KEILMEVIVG WRKFVKERKK MNGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.