CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87977	Canola	cytosol	46.08	20.61
CDY12173	Canola	cytosol	66.67	19.65
CDY28614	Canola	cytosol	70.59	18.37
CDY68511	Canola	cytosol, mitochondrion	62.75	15.8
CDX78740	Canola	cytosol	61.76	15.59
CDY39258	Canola	cytosol	69.61	14.37
CDY07474	Canola	cytosol	69.61	14.37
CDY16935	Canola	cytosol	64.71	13.41
CDX92158	Canola	cytosol	36.27	13.36
GSMUA_Achr8P30730_001	Banana	cytosol	61.76	13.29
CDX85460	Canola	cytosol	60.78	13.25
CDY02710	Canola	cytosol	61.76	12.8
VIT_01s0011g06600.t01	Wine grape	cytosol	61.76	12.73
VIT_04s0079g00600.t01	Wine grape	cytosol	60.78	12.7
GSMUA_Achr4P31270_001	Banana	cytosol	59.8	12.47
CDY15807	Canola	cytosol	58.82	12.17
CDY09396	Canola	cytosol	58.82	12.17
CDY04111	Canola	cytosol	57.84	11.97
CDY56295	Canola	cytosol	57.84	11.94
CDX78742	Canola	cytosol	10.78	11.58
CDX78739	Canola	cytosol, plastid	53.92	11.09
KRH42468	Soybean	cytosol	51.96	10.75
CDY46883	Canola	cytosol	50.0	10.56
KRH42467	Soybean	nucleus	50.98	10.55
KRH58569	Soybean	cytosol	50.98	10.55
KRH42466	Soybean	cytosol	48.04	10.4
CDY49834	Canola	cytosol	49.02	10.35
CDX70751	Canola	cytosol, plastid	61.76	9.81
CDX95824	Canola	cytosol	12.75	5.88
CDX78746	Canola	cytosol	6.86	4.58
CDX90118	Canola	plastid	16.67	3.12
CDY11756	Canola	plastid	16.67	3.12
CDY71197	Canola	cytosol	2.94	2.88
CDX70758	Canola	cytosol	2.94	2.54
CDY12174	Canola	cytosol	2.94	2.48
CDY48416	Canola	cytosol	3.92	1.72
CDY48414	Canola	cytosol	3.92	1.72

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	MapMan:35.1
GO:A0A078DFF5	EnsemblPlants:CDX87975	ProteinID:CDX87975	ProteinID:CDX87975.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00147336001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase
SUPFAM:SSF53383	UniParc:UPI0004EEAEEC	:	:	:	:

Description

BnaC03g54210D

Coordinates

chrLK031853:-:1191714..1192461

Molecular Weight (calculated)

11596.4 Da

IEP (calculated)

10.742

GRAVY (calculated)

-0.557

Length

102 amino acids

Sequence
(BLAST)

001: MRLLETVGSS EAIMLAGLAL KRNWQNKRKA EGKTYDKPNI VTGANVQVLH ELDTLPYKIS RKMGAEYFGN VKGKKVKREK PMEVIVGWRK FVKDTKKMNG
101: VC

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.