CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09396	Canola	cytosol	98.78	98.78
CDY04111	Canola	cytosol	96.55	96.55
CDY56295	Canola	cytosol	96.35	96.15
AT2G02000.1	Thale cress	cytosol	91.89	90.6
Solyc04g025530.2.1	Tomato	plastid	87.42	87.42
VIT_01s0011g06600.t01	Wine grape	cytosol	87.63	87.27
AT2G02010.2	Thale cress	plastid	96.15	86.97
GSMUA_Achr8P30730_001	Banana	cytosol	83.37	86.71
CDY16935	Canola	cytosol	85.8	85.98
VIT_04s0079g00600.t01	Wine grape	cytosol	84.99	85.86
PGSC0003DMT400058594	Potato	cytosol	86.21	85.51
Solyc01g005000.2.1	Tomato	cytosol	83.37	84.92
CDX78740	Canola	cytosol	68.97	84.16
CDX78739	Canola	cytosol, plastid	84.18	83.67
CDY07474	Canola	cytosol	82.96	82.79
CDY68511	Canola	cytosol, mitochondrion	67.75	82.47
CDY39258	Canola	cytosol	82.56	82.39
CDY28614	Canola	cytosol	65.11	81.89
GSMUA_Achr4P31270_001	Banana	cytosol	81.14	81.8
CDY02710	Canola	cytosol	81.34	81.5
CDY12173	Canola	cytosol	56.19	80.06
CDX92158	Canola	cytosol	44.83	79.78
CDX85460	Canola	cytosol	75.25	79.27
CDY46883	Canola	cytosol	75.05	76.6
CDY49834	Canola	cytosol	74.44	75.98
PGSC0003DMT400003251	Potato	cytosol	22.92	73.86
CDY71197	Canola	cytosol	14.4	68.27
CDX87977	Canola	cytosol	30.63	66.23
CDX70751	Canola	cytosol, plastid	85.8	65.89
CDX95824	Canola	cytosol	29.41	65.61
CDY12174	Canola	cytosol	15.82	64.46
CDX70758	Canola	cytosol	14.6	61.02
CDX87975	Canola	cytosol	12.17	58.82
CDX78746	Canola	cytosol	17.44	56.21
CDX78742	Canola	cytosol	10.55	54.74
CDY11756	Canola	plastid	19.27	17.46
CDX90118	Canola	plastid	19.27	17.46
CDY48416	Canola	cytosol	7.1	15.09
CDY48414	Canola	cytosol	7.1	15.09

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078FSI0	UniProt:A0A078FSI0	EnsemblPlants:CDY15807	ProteinID:CDY15807	ProteinID:CDY15807.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00090129001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2
MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0004EE4056	SEG:seg	:	:	:	:

Description

BnaC02g34260DGlutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:A0A078FSI0]

Coordinates

chrLK032058:-:307215..309924

Molecular Weight (calculated)

55844.9 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.257

Length

493 amino acids

Sequence
(BLAST)

001: MVLSKTASES DVSIHSTFAS RYVRTSLPRF EMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMESI NKNYVDMDEY PVTTELQNRC
101: VNMIARLFNA PLGDGEAAVG VGTVGSSEAI MLAGLAFKRQ WQNKRKAQGL PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLTGEFED VKLLNDLLVE KNKQTGWDTG IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RTKSDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY RNVMDNCREN MIVLRQGLEK TGRFNIVSKE NGVPLVAFSL KDSSCHDEFE VAETLRRFGW
401: IVPAYTMPAD AQHVTVLRVV IREDFSRTLA ERLVADFEKV LHELDTLPAR VHAKMANGKA NGVKKTEEET TREVTAYWKK FVETKKSNKN RIC

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.