CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78740	Canola	cytosol	96.3	96.53
CDX78742	Canola	cytosol	21.23	90.53
Bra008561.1-P	Field mustard	cytosol	100.0	85.99
CDY12173	Canola	cytosol	72.35	84.68
CDY28614	Canola	cytosol	81.23	83.93
KRH30893	Soybean	endoplasmic reticulum	84.2	83.58
CDY16935	Canola	cytosol	97.04	79.88
CDX70758	Canola	cytosol	22.96	78.81
CDX78746	Canola	cytosol	29.14	77.12
AT5G17330.1	Thale cress	cytosol	94.57	76.29
CDY02710	Canola	cytosol	92.59	76.22
CDX78739	Canola	cytosol, plastid	90.86	74.19
CDX85460	Canola	cytosol	83.7	72.44
VIT_04s0079g00600.t01	Wine grape	cytosol	83.7	69.47
VIT_01s0011g06600.t01	Wine grape	cytosol	84.2	68.89
CDY07474	Canola	cytosol	83.21	68.22
GSMUA_Achr8P30730_001	Banana	cytosol	79.75	68.14
CDY39258	Canola	cytosol	82.96	68.02
CDY15807	Canola	cytosol	82.47	67.75
CDY09396	Canola	cytosol	82.22	67.55
KRH72934	Soybean	cytosol	83.7	67.4
KRH17286	Soybean	cytosol	83.46	67.2
CDY04111	Canola	cytosol	81.73	67.14
GSMUA_Achr4P31270_001	Banana	cytosol	80.49	66.67
CDX87977	Canola	cytosol	37.53	66.67
KRG97998	Soybean	endoplasmic reticulum	82.72	66.6
CDY56295	Canola	cytosol	81.23	66.6
CDX95824	Canola	cytosol	34.81	63.8
CDX87975	Canola	cytosol	15.8	62.75
CDY46883	Canola	cytosol	72.35	60.66
CDY49834	Canola	cytosol	71.36	59.83
CDX70751	Canola	cytosol, plastid	94.57	59.66
CDX92158	Canola	cytosol	35.8	52.35
CDY48416	Canola	cytosol	9.88	17.24
CDY48414	Canola	cytosol	9.88	17.24
CDX90118	Canola	plastid	21.98	16.36
CDY11756	Canola	plastid	21.98	16.36
CDY71197	Canola	cytosol	0.74	2.88
CDY12174	Canola	cytosol	0.49	1.65

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078JS88	UniProt:A0A078JS88	EnsemblPlants:CDY68511	ProteinID:CDY68511	ProteinID:CDY68511.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00074842001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9
MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0004EE6F30	:	:	:	:	:

Description

BnaAnng27540DGlutamate decarboxylase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JS88]

Coordinates

chrLK037449:-:2198..4652

Molecular Weight (calculated)

45972.4 Da

IEP (calculated)

6.139

GRAVY (calculated)

-0.243

Length

405 amino acids

Sequence
(BLAST)

001: NRCVNMIAHL FNAPLGETET AVGVGTVGSS EAIMLAGLAF KRKWQNKRKA EGKPFDKPNI VTGANVQVCW EKFARYFEVE LKEVKLSEGY YVMDPEKAVE
101: MVDENTICVA AILGSTLNGE FEDVKLLNDL LVIKNKETGW DTPIHVDAAS GGFIAPFLYP ELEWDFRLPL VKSINVSGHK YGLVYAGIGW VVWRNKEDLP
201: EELIFHINYL GADQPTFTLN FSKGSSQVIA QYYQLIRLGH EGYRNVMENC RENMVVLREG LEKTGRFNIV SKDEGVPLVA FSLKDSSSHT EFEISDMLRR
301: YGWIVPAYTM PPNAQHITVL RVVIREDFSR TLAERLVIDI EKVMRELDEL PSRIIHKISL GEEKSEVNGD NLMVTVKKSD MEKQREVING WKKFVSDRKK
401: TNGIC

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.