CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68511	Canola	cytosol, mitochondrion	83.58	84.2
CDX78740	Canola	cytosol	82.6	83.42
KRG97998	Soybean	endoplasmic reticulum	97.3	78.93
KRH17286	Soybean	cytosol	89.71	72.76
Bra008561.1-P	Field mustard	cytosol	83.82	72.61
KRH72934	Soybean	cytosol	88.48	71.77
GSMUA_Achr8P30730_001	Banana	cytosol	81.86	70.46
Bra023612.1-P	Field mustard	cytosol	80.64	69.7
VIT_01s0011g06600.t01	Wine grape	cytosol	84.31	69.49
VIT_04s0079g00600.t01	Wine grape	cytosol	82.35	68.85
CDY16935	Canola	cytosol	82.84	68.7
Bra006397.1-P	Field mustard	cytosol	83.58	67.93
Os03t0720300-01	Rice	plastid	81.62	67.68
EER95206	Sorghum	cytosol	81.13	67.55
Zm00001d047981_P001	Maize	cytosol	80.88	67.35
EER93555	Sorghum	cytosol	81.37	67.34
GSMUA_Achr4P31270_001	Banana	cytosol	80.64	67.28
Os03t0236200-01	Rice	plasma membrane	80.88	67.07
AT5G17330.1	Thale cress	cytosol	82.35	66.93
CDY02710	Canola	cytosol	80.64	66.87
Zm00001d033805_P001	Maize	cytosol, extracellular	80.15	66.33
TraesCS4A01G369200.1	Wheat	cytosol	73.77	66.3
TraesCS4D01G052500.1	Wheat	plastid	80.39	66.26
TraesCS4B01G052300.1	Wheat	cytosol	80.39	66.26
TraesCS4A01G262600.1	Wheat	cytosol	80.39	66.26
Bra006396.1-P	Field mustard	cytosol, plastid	79.9	65.73
CDX78739	Canola	cytosol, plastid	79.9	65.73
TraesCS4B01G231400.1	Wheat	cytosol	78.43	64.0
CDX85460	Canola	cytosol	73.28	63.89
TraesCS4A01G075600.1	Wheat	cytosol	77.94	63.6
KRH38971	Soybean	cytosol	75.0	61.45
TraesCS4D01G232700.1	Wheat	cytosol	78.92	60.98
KRH58569	Soybean	cytosol	73.28	60.65
KRH42468	Soybean	cytosol	73.28	60.65
KRH09492	Soybean	cytosol	74.02	60.52
KRH42467	Soybean	nucleus	72.55	60.04
KRH42466	Soybean	cytosol	65.69	56.9
CDX70751	Canola	cytosol, plastid	82.11	52.18
Os05t0421750-00	Rice	mitochondrion	22.79	35.63
KRH01552	Soybean	plastid, vacuole	21.08	16.07
KRH70554	Soybean	endoplasmic reticulum	20.59	15.67
KRH25771	Soybean	cytosol	4.17	14.66

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EMBL:ACUP02007094	EnsemblPlantsGene:GLYMA_11G213000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351
GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829
GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	UniProt:I1LM82	InterPro:IPR015421
EnsemblPlants:KRH30893	ProteinID:KRH30893	ProteinID:KRH30893.1	PFAM:PF00282	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI000233CE47	:

Description

hypothetical protein

Coordinates

chr11:+:30593602..30596478

Molecular Weight (calculated)

46360.8 Da

IEP (calculated)

6.333

GRAVY (calculated)

-0.194

Length

408 amino acids

Sequence
(BLAST)

001: MQNRCVNMIA HLFNAPLEET EAAVGVGTVG SSEAIMLAGL AFKRKWQNRR KQEGKPFDKP NIVTGANVQV CWEKFARYFE VELKEVKLRD DYYVMDPEKA
101: VELVDENTIC VAAILGSTLN GEFEDVKRLN DLLIEKNKIT GWDTPIHVDA ASGGFIAPFL YPELEWDFRL PLVKSINVSG HKYGLVYAGI GWVIWRSKED
201: LPEELIFHIN YLGADQPTFT LNFSKGSSQV IAQYYQLIRL GFEGYRNVME NCRDNMLVLK EGLEKTGRFS IVSKDNGVPL VAFTLKDHTH FDEFQISDFL
301: RRFGWIVPAY TMPPDAQHVT VLRVVIREDF SRTLAERLVA DVEKVLHELD SLPARVISST SVTVTAEENG KVVVAKKSAM ETQREITAIW KKFVLERKKN
401: NDKMNGVC

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.