CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58569	Soybean	cytosol	95.54	95.54
KRH42468	Soybean	cytosol	94.73	94.73
KRH42466	Soybean	cytosol	90.26	94.48
GSMUA_Achr8P30730_001	Banana	cytosol	72.82	75.74
VIT_04s0079g00600.t01	Wine grape	cytosol	73.83	74.59
VIT_01s0011g06600.t01	Wine grape	cytosol	74.04	73.74
GSMUA_Achr4P31270_001	Banana	cytosol	72.01	72.6
KRH30893	Soybean	endoplasmic reticulum	60.04	72.55
KRG97998	Soybean	endoplasmic reticulum	73.63	72.17
KRH72934	Soybean	cytosol	73.43	71.97
KRH17286	Soybean	cytosol	73.23	71.77
KRH38971	Soybean	cytosol	71.6	70.88
KRH09492	Soybean	cytosol	70.39	69.54
CDX87975	Canola	cytosol	10.55	50.98
KRH01552	Soybean	plastid, vacuole	19.68	18.13
KRH25771	Soybean	cytosol	4.26	18.1
KRH70554	Soybean	endoplasmic reticulum	19.27	17.72

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100781791	Gene3D:3.40.640.10
Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	EMBL:ACUP02004804	EnsemblPlantsGene:GLYMA_08G091400	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	UniProt:I1KRN3
InterPro:IPR015421	EnsemblPlants:KRH42467	ProteinID:KRH42467	ProteinID:KRH42467.1	PFAM:PF00282	PANTHER:PTHR43321
PANTHER:PTHR43321:SF2	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TIGRFAMs:TIGR01788	UniParc:UPI000233899F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:6868887..6871319

Molecular Weight (calculated)

56170.1 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.353

Length

493 amino acids

Sequence
(BLAST)

001: MVFPKPASES DLFLHSNFAS RYARDSLPRF SIPEDSMPKE AAYQNIHDEL QLDAIPKLNL ASFVTTSMEE ECNKLIMESI NKNYVDMDEY PITTDLHNRC
101: VNMIARLFHA EIGENEIATG AGTVGSSEAI MLAGLAFKKK WQNKRKEEGK PYDKPNLVTG SNVQVCWEKF ARYFEVELRE VEVREGYYVM DPAKAVEMVD
201: ENTICVAAIL GSTYNGEFED VKLLNDLLLE KNKQTGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RTKDDLPEDL
301: VFHINYLGAD QPTFTLNFSK GSSQIIAQYY QLIRLGQEGY RSIMENCREN AMVLKEDLEK SGHFNILSKD DGVPVVAFSL KDRSRYDEFK ISEMLRRHGW
401: IVPAYPMPPA AQHINVLRVV IRAEFSRTLA ERLAFDIHNV MDELEKLHPP IVTKNTKEEN KAMVENGVKN TALDAHREII AQESNKRQKI MAA

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.