CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17286	Soybean	cytosol	96.62	96.62
KRG97998	Soybean	endoplasmic reticulum	89.66	89.66
KRH30893	Soybean	endoplasmic reticulum	71.77	88.48
GSMUA_Achr8P30730_001	Banana	cytosol	83.3	88.4
VIT_01s0011g06600.t01	Wine grape	cytosol	85.88	87.27
VIT_04s0079g00600.t01	Wine grape	cytosol	83.7	86.27
CDY16935	Canola	cytosol	84.29	86.18
EER95206	Sorghum	cytosol	82.9	85.1
Bra006397.1-P	Field mustard	cytosol	84.89	85.06
Zm00001d047981_P001	Maize	cytosol	82.7	84.9
AT5G17330.1	Thale cress	cytosol	84.69	84.86
Bra008561.1-P	Field mustard	cytosol	79.32	84.71
Os03t0720300-01	Rice	plastid	82.5	84.35
Os03t0236200-01	Rice	plasma membrane	82.11	83.94
CDX78740	Canola	cytosol	67.4	83.91
CDY68511	Canola	cytosol, mitochondrion	67.4	83.7
TraesCS4A01G369200.1	Wheat	cytosol	75.35	83.48
GSMUA_Achr4P31270_001	Banana	cytosol	80.91	83.23
EER93555	Sorghum	cytosol	81.51	83.16
Bra006396.1-P	Field mustard	cytosol, plastid	81.71	82.86
CDX78739	Canola	cytosol, plastid	81.71	82.86
Zm00001d033805_P001	Maize	cytosol, extracellular	80.52	82.15
CDY02710	Canola	cytosol	80.32	82.11
TraesCS4D01G052500.1	Wheat	plastid	80.52	81.82
TraesCS4B01G052300.1	Wheat	cytosol	80.52	81.82
TraesCS4A01G262600.1	Wheat	cytosol	80.52	81.82
Bra023612.1-P	Field mustard	cytosol	75.94	80.93
TraesCS4B01G231400.1	Wheat	cytosol	80.32	80.8
CDX85460	Canola	cytosol	75.15	80.77
TraesCS4A01G075600.1	Wheat	cytosol	79.72	80.2
KRH38971	Soybean	cytosol	77.53	78.31
KRH09492	Soybean	cytosol	76.94	77.56
TraesCS4D01G232700.1	Wheat	cytosol	80.72	76.89
KRH42467	Soybean	nucleus	71.97	73.43
KRH42468	Soybean	cytosol	71.77	73.23
KRH58569	Soybean	cytosol	71.57	73.02
KRH42466	Soybean	cytosol	65.21	69.64
CDX70751	Canola	cytosol, plastid	83.1	65.11
Os05t0421750-00	Rice	mitochondrion	19.28	37.16
KRH25771	Soybean	cytosol	4.37	18.97
KRH01552	Soybean	plastid, vacuole	18.89	17.76
KRH70554	Soybean	endoplasmic reticulum	18.49	17.35

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100787167	Gene3D:3.40.640.10
Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	EMBL:ACUP02001257	EnsemblPlantsGene:GLYMA_02G241400	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	UniProt:I1JHT1
InterPro:IPR015421	EnsemblPlants:KRH72934	ProteinID:KRH72934	ProteinID:KRH72934.1	PFAM:PF00282	PANTHER:PTHR43321
PANTHER:PTHR43321:SF9	MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TIGRFAMs:TIGR01788	UniParc:UPI0002337A6D	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:42982745..42989316

Molecular Weight (calculated)

57276.0 Da

IEP (calculated)

5.058

GRAVY (calculated)

-0.198

Length

503 amino acids

Sequence
(BLAST)

001: MVLSKTASET DVSVHSTFAS RYVRTSLPRF KMAEESIPKE AAYQIIHDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMAAI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEESETAVG VGTVGSSEAI MLAGLAFKRR WQNRRKLEGK PYDNPNIVTG ANVQVCWEKF ARYFEVELKE VKLRDGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RSKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGYEGY KMVMENCNDN MAVLKEGLEK TGRFEIISKD IGVPLVAFTL KDHTHFNEFQ ISDMLRRYGW
401: IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVIDVTKV VHELDLLPAR VISTNTIMVT GEAGEENDEK VLFAKKSEIE TQREITKAWK KFVMDRKKMN
501: GVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.