Factsheet for Zm00001d033805_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93555	Sorghum	cytosol	97.77	97.77
Os03t0720300-01	Rice	plastid	95.54	95.73
TraesCS4B01G052300.1	Wheat	cytosol	88.03	87.68
TraesCS4D01G052500.1	Wheat	plastid	87.83	87.47
TraesCS4A01G262600.1	Wheat	cytosol	87.83	87.47
HORVU4Hr1G008700.1	Barley	cytosol	87.83	87.47
GSMUA_Achr8P30730_001	Banana	cytosol	83.57	86.92
Zm00001d047981_P001	Maize	cytosol	86.21	86.73
GSMUA_Achr4P31270_001	Banana	cytosol	84.79	85.48
VIT_04s0079g00600.t01	Wine grape	cytosol	84.18	85.04
VIT_01s0011g06600.t01	Wine grape	cytosol	83.57	83.23
Solyc11g011920.1.1	Tomato	plastid	84.79	83.1
AT5G17330.1	Thale cress	cytosol	84.58	83.07
PGSC0003DMT400034693	Potato	cytosol	84.38	82.87
Solyc05g054050.2.1	Tomato	plastid	83.16	82.5
KRG97998	Soybean	endoplasmic reticulum	82.76	81.11
KRH17286	Soybean	cytosol	82.35	80.72
KRH72934	Soybean	cytosol	82.15	80.52
KRH30893	Soybean	endoplasmic reticulum	66.33	80.15
AT1G65960.2	Thale cress	cytosol	79.92	79.76
Zm00001d003531_P002	Maize	plastid	78.5	79.14
AT2G02000.1	Thale cress	cytosol	79.51	78.4
AT2G02010.2	Thale cress	plastid	82.35	74.5
Zm00001d003522_P002	Maize	cytosol	65.92	63.98
CDX70758	Canola	cytosol	15.21	63.56
Zm00001d031749_P005	Maize	cytosol	64.5	60.8
CDX78746	Canola	cytosol	17.24	55.56
Bra006404.1-P	Field mustard	cytosol	17.24	55.56
CDX78742	Canola	cytosol	10.55	54.74
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.55	54.74
Os05t0421750-00	Rice	mitochondrion	20.89	39.46
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	19.07	17.06

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	EntrezGene:100191549	Gene3D:3.40.640.10
Gene3D:3.90.1150.160	MapMan:4.1.1.1.3.1	UniProt:B4F972	EMBL:BT033660	EMBL:BT042724	EMBL:BT087213
EMBL:EU954500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	ProteinID:ONM08686.1	PFAM:PF00282	PANTHER:PTHR43321
PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI00017B62B1	EnsemblPlantsGene:Zm00001d033805	EnsemblPlants:Zm00001d033805_P001	EnsemblPlants:Zm00001d033805_T001	SEG:seg	:

Description

Glutamate decarboxylase 1

Coordinates

chr1:+:274230300..274242798

Molecular Weight (calculated)

55222.3 Da

IEP (calculated)

5.712

GRAVY (calculated)

-0.174

Length

493 amino acids

Sequence
(BLAST)

001: MVLSHGVGGS DESVHSTFAS RYVRTSLPRY RMPEQSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIQASV NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGDAETAVG VGTVGSSEAI MLAGLAFKRR WQNKMKAAGK PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSDGYYVM DPQKAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLTK KNAETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RTKVDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY KNIMENCQEN ATVLKQGLEK TGKFNIVSKD NGVPLVAFSL KDSSRHSEFE ISDFLRRFGW
401: IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVLDIEKV LHELDALPAR VPSGDLAALA AAESSEREME KQRQVISLWK RAVLAKKKTN GVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.