Factsheet for TraesCS4D01G052500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G262600.1	Wheat	cytosol	100.0	100.0
TraesCS4B01G052300.1	Wheat	cytosol	99.8	99.8
HORVU4Hr1G008700.1	Barley	cytosol	98.99	98.99
EER93555	Sorghum	cytosol	88.89	89.25
Os03t0720300-01	Rice	plastid	88.28	88.82
Zm00001d033805_P001	Maize	cytosol, extracellular	87.47	87.83
GSMUA_Achr8P30730_001	Banana	cytosol	83.23	86.92
VIT_04s0079g00600.t01	Wine grape	cytosol	83.64	84.84
VIT_01s0011g06600.t01	Wine grape	cytosol	84.24	84.24
Solyc11g011920.1.1	Tomato	plastid	85.45	84.1
AT5G17330.1	Thale cress	cytosol	85.25	84.06
PGSC0003DMT400034693	Potato	cytosol	85.25	84.06
GSMUA_Achr4P31270_001	Banana	cytosol	82.83	83.84
Solyc05g054050.2.1	Tomato	plastid	83.64	83.3
KRG97998	Soybean	endoplasmic reticulum	82.63	81.31
KRH17286	Soybean	cytosol	82.02	80.72
KRH72934	Soybean	cytosol	81.82	80.52
KRH30893	Soybean	endoplasmic reticulum	66.26	80.39
AT1G65960.2	Thale cress	cytosol	80.2	80.36
TraesCS2D01G313500.1	Wheat	plastid	78.38	79.84
AT2G02000.1	Thale cress	cytosol	80.61	79.8
TraesCS4D01G232700.1	Wheat	cytosol	84.24	78.98
TraesCS3D01G023900.1	Wheat	cytosol	75.96	76.73
AT2G02010.2	Thale cress	plastid	82.63	75.05
TraesCS3D01G523200.1	Wheat	cytosol, plastid	75.56	74.65
TraesCS2D01G313800.1	Wheat	cytosol	70.71	70.14
CDX70758	Canola	cytosol	14.95	62.71
CDX78742	Canola	cytosol	10.71	55.79
CDX78746	Canola	cytosol	17.17	55.56
Bra006404.1-P	Field mustard	cytosol	17.17	55.56
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.51	54.74
Os05t0421750-00	Rice	mitochondrion	20.4	38.7
TraesCS3D01G085400.1	Wheat	plasma membrane	19.6	18.0

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	EnsemblPlantsGene:TraesCS4D01G052500	EnsemblPlants:TraesCS4D01G052500.1
TIGR:cd06450	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:28836882..28840804

Molecular Weight (calculated)

55747.7 Da

IEP (calculated)

5.278

GRAVY (calculated)

-0.231

Length

495 amino acids

Sequence
(BLAST)

001: MVLSHAASAG SSDDSVHSTF ASRYVRASLP RFRMPENSIP KEAAYQIIND ELMLDGNPRL NLASFVTTWM EPECNKLMMD SINKNYVDMD EYPVTTELQN
101: RCVNMIAHLF NAPLGETETA VGVGTVGSSE AIMLAGLAFK RRWQNKMKAA GKPCDKPNIV TGANVQVCWE KFARYFEVEL KEVKLSEGYY VMDPEKAVEM
201: VDENTICVAA ILGSTLNGEF EDVKMLNDLL VKKNEETGWD TPIHVDAASG GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWC IWRSKEDLPD
301: ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNIMDNCQ ENAMVLKEGL ERTGRFNIVS KDQGVPLVAF SLKDSSRHDE FEISEFLRRF
401: GWIVPAYTMP PDAQHVTVLR VVIREDFSRT FAERLVIDIE KVLHELDALP SRSSGPALQH PNGDTVSEKD LARQREVVSV WKRAVAARKK TQGVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.