CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033805_P001	Maize	cytosol, extracellular	97.77	97.77
Os03t0720300-01	Rice	plastid	96.55	96.75
TraesCS4B01G052300.1	Wheat	cytosol	89.45	89.09
TraesCS4D01G052500.1	Wheat	plastid	89.25	88.89
TraesCS4A01G262600.1	Wheat	cytosol	89.25	88.89
HORVU4Hr1G008700.1	Barley	cytosol	88.84	88.48
GSMUA_Achr8P30730_001	Banana	cytosol	84.38	87.76
EER95206	Sorghum	cytosol	86.82	87.35
VIT_04s0079g00600.t01	Wine grape	cytosol	85.19	86.07
GSMUA_Achr4P31270_001	Banana	cytosol	85.19	85.89
VIT_01s0011g06600.t01	Wine grape	cytosol	84.99	84.65
Solyc05g054050.2.1	Tomato	plastid	83.98	83.3
Solyc11g011920.1.1	Tomato	plastid	84.79	83.1
PGSC0003DMT400034693	Potato	cytosol	84.58	83.07
AT5G17330.1	Thale cress	cytosol	84.58	83.07
KRG97998	Soybean	endoplasmic reticulum	83.37	81.71
KRH17286	Soybean	cytosol	83.37	81.71
KRH72934	Soybean	cytosol	83.16	81.51
KRH30893	Soybean	endoplasmic reticulum	67.34	81.37
AT1G65960.2	Thale cress	cytosol	80.12	79.96
EES12248	Sorghum	plastid	78.7	79.51
AT2G02000.1	Thale cress	cytosol	80.12	79.0
AT2G02010.2	Thale cress	plastid	82.96	75.05
EES10890	Sorghum	cytosol	71.2	69.09
OQU80616	Sorghum	plastid	81.14	66.89
CDX70758	Canola	cytosol	15.21	63.56
CDX78742	Canola	cytosol	10.75	55.79
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.75	55.79
CDX78746	Canola	cytosol	17.24	55.56
Bra006404.1-P	Field mustard	cytosol	17.24	55.56
Os05t0421750-00	Rice	mitochondrion	21.3	40.23
EES02668	Sorghum	cytosol	19.68	18.2

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:8063364	UniProt:C5WMY2	EnsemblPlants:EER93555	ProteinID:EER93555	ProteinID:EER93555.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	MetaCyc:PWY-4321
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	EnsemblPlantsGene:SORBI_3001G111000	SUPFAM:SSF53383	unigene:Sbi.2822
TIGRFAMs:TIGR01788	UniParc:UPI0001A82834	RefSeq:XP_002466557.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:8627539..8635411

Molecular Weight (calculated)

55164.3 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.165

Length

493 amino acids

Sequence
(BLAST)

001: MVLSHGVGGS DESVHSTFAS RYVRASLPRF RMPEQSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIQASV NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGDSETAVG VGTVGSSEAI MLAGLAFKRR WQNKMKAAGK PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSDGYYVM DPQKAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLTK KNAETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY KNIMENCQEN AMVLKQGLEK TGKFNIVSKD NGVPLVAFSL KDSSRHNEFE ISDFLRRFGW
401: IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVLDIEKV LHELDALPAR VPSGDLAALA AAEASEKAME KQREVISLWK RAVLAKKKTN GVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.