CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003522_P002	Maize	cytosol	88.78	88.78
TraesCS2B01G334000.1	Wheat	cytosol	86.81	88.38
TraesCS2D01G313800.1	Wheat	cytosol	86.61	88.18
TraesCS2A01G315800.1	Wheat	cytosol	86.42	87.98
Os04t0447800-01	Rice	cytosol, plasma membrane	85.24	86.6
GSMUA_Achr7P12330_001	Banana	cytosol	76.57	77.34
VIT_01s0011g06610.t01	Wine grape	cytosol	71.65	71.23
EER93555	Sorghum	cytosol	69.09	71.2
EES12248	Sorghum	plastid	67.91	70.7
EER95206	Sorghum	cytosol	68.11	70.61
HORVU2Hr1G078580.10	Barley	cytosol	71.26	66.18
OQU80616	Sorghum	plastid	68.9	58.53
EES02668	Sorghum	cytosol	19.29	18.39

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:8073378	UniProt:C5Y9A8	EnsemblPlants:EES10890	ProteinID:EES10890	ProteinID:EES10890.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF4	MetaCyc:PWY-4321
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	EnsemblPlantsGene:SORBI_3006G096500	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0001A86DD3	RefSeq:XP_002446562.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:46657213..46659360

Molecular Weight (calculated)

56609.9 Da

IEP (calculated)

5.682

GRAVY (calculated)

-0.126

Length

508 amino acids

Sequence
(BLAST)

001: MVLTHVHDLD DAAAASAVVF ASRYVQDPLP RYELGEKSIS KDAAYQIIHD ELLLDSSPRL NLASFVTTWM EPECDRLILE GINKNYADMD EYPVTTELQN
101: RCVNIIARLF HAPAVGASSD GKAVGVGTVG SSEAIMLAGL AFKRRWQNRR KAAGKPYDKP NIVTGANVQV CWEKFARYFE VELKEVKLRE GCYVMDPDEA
201: VRMVDENTIC VAAILGSTLT GEFEDVKMLN DLLAAKNAET GWDTPIHVDA ASGGFIAPFL YPELEWDFRL PLVKSINVSG HKYGLVYAGV GWVIWRSKED
301: LPEDLIFHIN YLGADQPTFT LNFSKGSSQI IAQYYQFLRL GFEGYRNVME NCMESAQTLR EGLEQMGRFT IISKEQGVPL VAFTFKSKDE TSLAFKLSSE
401: LRRYGWIVPA YTMPANLEHM AVLRVVVWED FGRPLAERFL SHVRMALEEL DHAAKGGPVP RMRVTIELGP PDRGSGEEAS ARVVKREAVV VPVHRSVSLS
501: GGKTKGVC

Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)

001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC

Arabidopsis Description

GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.