CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047981_P001	Maize	cytosol	97.14	97.14
Os03t0236200-01	Rice	plasma membrane	95.1	94.72
TraesCS4A01G369200.1	Wheat	cytosol	83.67	90.31
HORVU4Hr1G064790.6	Barley	cytosol	91.22	89.94
TraesCS4B01G231400.1	Wheat	cytosol	91.22	89.4
TraesCS4A01G075600.1	Wheat	cytosol	91.02	89.2
GSMUA_Achr8P30730_001	Banana	cytosol	85.71	88.61
VIT_04s0079g00600.t01	Wine grape	cytosol	86.94	87.3
EER93555	Sorghum	cytosol	87.35	86.82
VIT_01s0011g06600.t01	Wine grape	cytosol	87.14	86.26
GSMUA_Achr4P31270_001	Banana	cytosol	84.9	85.07
TraesCS4D01G232700.1	Wheat	cytosol	91.63	85.04
AT5G17330.1	Thale cress	cytosol	85.51	83.47
Solyc05g054050.2.1	Tomato	plastid	84.29	83.1
KRH72934	Soybean	cytosol	85.1	82.9
Solyc11g011920.1.1	Tomato	plastid	84.69	82.5
PGSC0003DMT400034693	Potato	cytosol	84.49	82.47
KRG97998	Soybean	endoplasmic reticulum	84.49	82.31
KRH17286	Soybean	cytosol	84.49	82.31
KRH30893	Soybean	endoplasmic reticulum	67.55	81.13
AT1G65960.2	Thale cress	cytosol	81.02	80.36
AT2G02000.1	Thale cress	cytosol	80.41	78.8
EES12248	Sorghum	plastid	77.55	77.87
AT2G02010.2	Thale cress	plastid	83.06	74.68
EES10890	Sorghum	cytosol	70.61	68.11
CDX70758	Canola	cytosol	15.51	64.41
OQU80616	Sorghum	plastid	78.57	64.38
CDX78746	Canola	cytosol	17.96	57.52
Bra006404.1-P	Field mustard	cytosol	17.96	57.52
CDX78742	Canola	cytosol	10.0	51.58
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.0	51.58
EES02668	Sorghum	cytosol	20.0	18.39

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EntrezGene:8085236	UniProt:C5WRM9	EnsemblPlants:EER95206	ProteinID:EER95206	ProteinID:EER95206.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	MetaCyc:PWY-4321
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	EnsemblPlantsGene:SORBI_3001G443800	SUPFAM:SSF53383	unigene:Sbi.10791
TIGRFAMs:TIGR01788	UniParc:UPI0001A832AD	RefSeq:XP_002468208.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:72093980..72096657

Molecular Weight (calculated)

55683.9 Da

IEP (calculated)

5.731

GRAVY (calculated)

-0.247

Length

490 amino acids

Sequence
(BLAST)

001: MVLSKAVSES DMSVHSTFAS RYVRSSLPRY RMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMAAI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGESETAVG VGTVGSSEAI MLAGLAFKRR WQNKRRAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELRE VKLRDGYYVM DPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLEV KNGETGWGTP IHVDAASGGF IAPFLYPELE WDFRLPWVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRHGFEGY RNIMENCHEN AMVLKEGLEK TGRFNIVSKD EGVPLVAFSL KDRSRHDEFE ISDMLRRFGW
401: IVPAYTMPAD AQHVTVLRVV IREEFSRTLA ERLVLDIEKV MYQLDALPSR IPPPPPPAQL VRKKSELETQ RSVTEAWKKF VLAKKTNGVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.