Factsheet for Solyc11g011920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 1
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034693	Potato	cytosol	96.82	97.01
Solyc05g054050.2.1	Tomato	plastid	88.27	89.34
GSMUA_Achr8P30730_001	Banana	cytosol	82.9	87.97
VIT_01s0011g06600.t01	Wine grape	cytosol	85.88	87.27
VIT_04s0079g00600.t01	Wine grape	cytosol	84.49	87.09
Solyc04g025530.2.1	Tomato	plastid	84.69	86.41
TraesCS4A01G262600.1	Wheat	cytosol	84.1	85.45
TraesCS4D01G052500.1	Wheat	plastid	84.1	85.45
TraesCS4B01G052300.1	Wheat	cytosol	84.1	85.45
Zm00001d047981_P001	Maize	cytosol	82.7	84.9
HORVU4Hr1G008700.1	Barley	cytosol	83.5	84.85
EER93555	Sorghum	cytosol	83.1	84.79
Zm00001d033805_P001	Maize	cytosol, extracellular	83.1	84.79
Os03t0720300-01	Rice	plastid	82.9	84.76
EER95206	Sorghum	cytosol	82.5	84.69
Os03t0236200-01	Rice	plasma membrane	82.31	84.15
TraesCS4A01G369200.1	Wheat	cytosol	75.75	83.92
Solyc01g005000.2.1	Tomato	cytosol	80.72	83.88
GSMUA_Achr4P31270_001	Banana	cytosol	81.51	83.84
TraesCS4B01G231400.1	Wheat	cytosol	81.51	82.0
HORVU4Hr1G064790.6	Barley	cytosol	80.72	81.69
TraesCS4A01G075600.1	Wheat	cytosol	81.11	81.6
TraesCS4D01G232700.1	Wheat	cytosol	81.91	78.03
Solyc03g098240.2.1	Tomato	plastid	74.75	74.9
CDX70758	Canola	cytosol	14.91	63.56
CDX78746	Canola	cytosol	17.1	56.21
Bra006404.1-P	Field mustard	cytosol	17.1	56.21
Bra006399.1-P	Field mustard	cytosol, mitochondrion	10.54	55.79
CDX78742	Canola	cytosol	10.54	55.79
Os05t0421750-00	Rice	mitochondrion	19.88	38.31
Solyc05g015860.2.1	Tomato	plastid	19.28	18.03

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EMBL:AB359914	UniProt:B1Q3F1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351
GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829
GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282
PANTHER:PTHR43321	PANTHER:PTHR43321:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc11g011920.1	EnsemblPlants:Solyc11g011920.1.1	TIGRFAMs:TIGR01788	UniParc:UPI0001720465	SEG:seg	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:B1Q3F1]

Coordinates

chr11:-:4848830..4855228

Molecular Weight (calculated)

56960.4 Da

IEP (calculated)

5.311

GRAVY (calculated)

-0.240

Length

503 amino acids

Sequence
(BLAST)

001: MVLSKIASES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMDSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEDGETAVG VGTVGSSEAI MLAGLAFKRK WQNKMKAQGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLTDGYYVM SPEKAVEMVD
201: ENTICVAAIL GSTLNGEFED VKKLNDLLIE KNKETGWDTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPDEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGYEGY KNVMENCQEN ARVLREGLEK TGRFEIVSKE VGVPLVAFSL KDNSKHDEFE ISETLRRFGW
401: IVPAYTMPPD AQHITVLRVV IREDFSRTLA ERLVMDIVKV LHELDMLPAR VKAKLAVAEE AAAANGIDSV AHHKTDREWE LQVTEAWKKF VADKKKNKTM
501: GVC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.