Factsheet for Solyc05g015860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051021	Potato	plastid	93.49	92.12
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	78.07	78.21
KRH01552	Soybean	plastid, vacuole	76.95	77.38
KRH70554	Soybean	endoplasmic reticulum	76.21	76.49
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	74.35	73.53
Bra010909.1-P	Field mustard	plastid	73.23	72.43
CDY11756	Canola	plastid	73.23	72.43
CDX90118	Canola	plastid	73.23	72.43
Os01t0100900-01	Rice	nucleus	71.56	71.43
GSMUA_Achr6P06370_001	Banana	golgi, mitochondrion, plasma membrane, vacuole	71.0	71.27
TraesCS3D01G085400.1	Wheat	plasma membrane	70.63	70.5
TraesCS3B01G100600.1	Wheat	golgi	70.63	70.5
EES02668	Sorghum	cytosol	69.52	70.17
KRH25771	Soybean	cytosol	15.06	69.83
Bra032860.1-P	Field mustard	cytosol	9.11	69.01
TraesCS3A01G085400.2	Wheat	plasma membrane	71.0	68.95
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	70.07	68.42
HORVU3Hr1G015150.11	Barley	cytosol	67.84	67.72
CDY48414	Canola	cytosol	26.39	61.21
CDY48416	Canola	cytosol	26.39	61.21
Solyc01g005000.2.1	Tomato	cytosol	18.22	20.25
Solyc05g054050.2.1	Tomato	plastid	18.4	19.92
Solyc04g025530.2.1	Tomato	plastid	18.03	19.68
Solyc03g098240.2.1	Tomato	plastid	18.03	19.32
Solyc11g011920.1.1	Tomato	plastid	18.03	19.28

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:5.7.5.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016829
GO:GO:0016831	GO:GO:0019752	GO:GO:0030149	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422
UniProt:K4BYV2	PFAM:PF00282	PANTHER:PTHR42735	PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc05g015860.2	EnsemblPlants:Solyc05g015860.2.1	UniParc:UPI0002766C71

Description

Sphingosine-1-phosphate lyase [Source:Projected from Arabidopsis thaliana (AT1G27980) UniProtKB/Swiss-Prot;Acc:Q9C509]

Coordinates

chr5:+:12526930..12533509

Molecular Weight (calculated)

59027.8 Da

IEP (calculated)

8.603

GRAVY (calculated)

0.046

Length

538 amino acids

Sequence
(BLAST)

001: MAFPIPPWLN QFRASANSFL SQYEPIILLI TPLFSLLIAR ILQSIFLVIH DRGLKATIIS FVMTAIKLVP GVKKHIDSEK QKIVDKLQGS SNRDGWRTEL
101: PKSGLGDNVL VQMRDEKQKD VTWQGKCSGT VYIGGNENEG HFSLINEACS MFAHTNPLHL SVFPSVVRFE AEVVAMTAAI LGSKEKASGG KICGNMTSGG
201: TESILLAVKS SRDYMNAKKG ITKPEMIIPV SAHSAYDKAA QYFKIKLWRV PVDKEYRADV KAINRYINKN TIMIVGSAPG FPHGIIDPIE ELGDLASSYQ
301: ICFHVDLCLG GFVLPFARKL GYPVPPFDFT VQGVTSISVD VHKYGLAPKG TSVVLYRNRE IRKHQFVAVT EWTGGLYVSP TIAGSRAGGL IAGAWAAMIS
401: LGSEGYLENT KEIMEASKRI QKGIQDIPEL YVIGRPDMSI IAFGSDVVDI FEVNDVLSSK GWHLNALQRP NSVHICVTLQ HVPVVQIFLK DLRDSVQTVK
501: ENPGPVNGGF APIYGAAGKM PDRVMVQDLL VEFMDSSC

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.