Factsheet for GSMUA_Achr6P06370_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, vacuole

Predictor Summary:

cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plasma membrane, vacuole
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02668	Sorghum	cytosol	75.19	75.61
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	75.19	75.05
TraesCS3D01G085400.1	Wheat	plasma membrane	75.19	74.77
Os01t0100900-01	Rice	nucleus	75.19	74.77
TraesCS3B01G100600.1	Wheat	golgi	75.0	74.58
KRH70554	Soybean	endoplasmic reticulum	73.88	73.88
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	75.56	73.5
KRH01552	Soybean	plastid, vacuole	72.95	73.08
TraesCS3A01G085400.2	Wheat	plasma membrane	75.19	72.74
Solyc05g015860.2.1	Tomato	plastid	71.27	71.0
HORVU3Hr1G015150.11	Barley	cytosol	70.52	70.13
CDY11756	Canola	plastid	70.34	69.3
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	70.15	69.12
Bra010909.1-P	Field mustard	plastid	69.96	68.93
CDX90118	Canola	plastid	69.96	68.93
PGSC0003DMT400051021	Potato	plastid	68.1	66.85
Bra032860.1-P	Field mustard	cytosol	8.77	66.2
KRH25771	Soybean	cytosol	13.99	64.66
CDY48416	Canola	cytosol	25.56	59.05
CDY48414	Canola	cytosol	25.56	59.05
GSMUA_Achr8P22810_001	Banana	cytosol	18.66	21.1
GSMUA_Achr8P30730_001	Banana	cytosol	18.47	20.89
GSMUA_Achr4P31270_001	Banana	cytosol	18.66	20.45
GSMUA_Achr7P12330_001	Banana	cytosol	18.84	20.08
GSMUA_Achr7P02370_001	Banana	cytosol	18.47	19.84

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:5.7.5.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016829
GO:GO:0016831	GO:GO:0019752	GO:GO:0030149	GO:GO:0030170	EnsemblPlantsGene:GSMUA_Achr6G06370_001	EnsemblPlants:GSMUA_Achr6P06370_001
EnsemblPlants:GSMUA_Achr6T06370_001	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0T4N5	PFAM:PF00282	PANTHER:PTHR42735
PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TMHMM:TMhelix	UniParc:UPI000295C905	SEG:seg	:	:	:

Description

Sphingosine-1-phosphate lyase [Source:GMGC_GENE;Acc:GSMUA_Achr6G06370_001]

Coordinates

chr6:+:4293301..4301688

Molecular Weight (calculated)

58509.2 Da

IEP (calculated)

8.952

GRAVY (calculated)

-0.019

Length

536 amino acids

Sequence
(BLAST)

001: MEDRMLRLRA AANAALSRYE PLALVVAPLL TLLLARSLHA LFLSVREKGI KAAVLGLLFA CVKSIPGVSW YIESEKKKVV EKLQSGSKSK RDSWRTELPN
101: IGLGKATIQE LEDARNKDIA WQGKCSGTVY IGGSDSENHF ALINEAHAMF SHTNPLHQDV FQSVARYEAE VVAMTAALLS SREPASGGQI CGNMTSGGTE
201: SILLAVKTSR DYMRTKKGIT KPEMIIPGSA HSAYDKAAQY FNIKLWRVPV NKDYVADVQR IRRCINGNTI LIVGSAPGFP HGVIDPIEEL GDLASRYGVC
301: LHVDLCLGGF VLPFARKLGY PIPPFDFSVK GVTSISTDVH KYGLGPKGTS VVLYRNREIR KHQFVAVTEW SGGLYVSPTM AGSRPGGLIA GAWAAMMSLG
401: LNGYLENTRQ MMEVSKKIQK GIEEIPGLFI IGQPHMTVVA FGSNDIDIFE VNDMMTSKGW HLNALQKPNS IHICVTLQHL HVVGDFLRDL RESVKMVKEN
501: PGPISGGLAP LYGAAGKMPD RGIVQDLLVE FMDSSC

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.